Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC13.63□□□□□ -0.23
COL5A1P20908 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
COL5A1P20908 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL5A1P20908 AF274858.1-201ENST00000406288 372 ntBASIC13.63□□□□□ -0.23
COL5A1P20908 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC13.63□□□□□ -0.23
COL5A1P20908 AC092573.1-201ENST00000433054 884 ntBASIC13.63□□□□□ -0.23
COL5A1P20908 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC13.63□□□□□ -0.23
COL5A1P20908 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
COL5A1P20908 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC13.63□□□□□ -0.23
COL5A1P20908 TYMSP2-201ENST00000589501 424 ntBASIC13.63□□□□□ -0.23
COL5A1P20908 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC13.63□□□□□ -0.23
COL5A1P20908 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC13.63□□□□□ -0.23
COL5A1P20908 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC13.63□□□□□ -0.23
COL5A1P20908 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC13.63□□□□□ -0.23
COL5A1P20908 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL5A1P20908 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.63□□□□□ -0.23
COL5A1P20908 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL5A1P20908 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
COL5A1P20908 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC13.62□□□□□ -0.23
COL5A1P20908 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC13.62□□□□□ -0.23
COL5A1P20908 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC13.62□□□□□ -0.23
COL5A1P20908 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC13.62□□□□□ -0.23
COL5A1P20908 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC13.62□□□□□ -0.23
COL5A1P20908 AL009176.1-201ENST00000607876 650 ntBASIC13.62□□□□□ -0.23
COL5A1P20908 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.62□□□□□ -0.23
COL5A1P20908 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL5A1P20908 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC13.62□□□□□ -0.23
COL5A1P20908 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
COL5A1P20908 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
COL5A1P20908 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
COL5A1P20908 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
COL5A1P20908 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC13.62□□□□□ -0.23
COL5A1P20908 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 AC103592.1-201ENST00000394513 664 ntBASIC13.62□□□□□ -0.23
COL5A1P20908 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC13.62□□□□□ -0.23
COL5A1P20908 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC13.62□□□□□ -0.23
COL5A1P20908 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC13.62□□□□□ -0.23
COL5A1P20908 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.62□□□□□ -0.23
COL5A1P20908 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC13.62□□□□□ -0.23
COL5A1P20908 AC023968.2-201ENST00000560593 1049 ntBASIC13.62□□□□□ -0.23
COL5A1P20908 COQ4-204ENST00000608951 781 ntTSL 2 BASIC13.62□□□□□ -0.23
COL5A1P20908 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
COL5A1P20908 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL5A1P20908 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL5A1P20908 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.61□□□□□ -0.23
COL5A1P20908 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
COL5A1P20908 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
COL5A1P20908 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC13.61□□□□□ -0.23
COL5A1P20908 LINC00115-201ENST00000473798 1317 ntBASIC13.61□□□□□ -0.23
COL5A1P20908 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.61□□□□□ -0.23
COL5A1P20908 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms