Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC112176.1-201ENST00000565428 3024 ntBASIC11.36□□□□□ -0.59
CXCL1P09341 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 AC011840.2-201ENST00000563063 1520 ntBASIC11.36□□□□□ -0.59
CXCL1P09341 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 TMEM147-AS1-205ENST00000590717 3300 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 SLC28A1-201ENST00000286749 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 AL445250.1-201ENST00000641671 2259 ntBASIC11.36□□□□□ -0.59
CXCL1P09341 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
CXCL1P09341 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
CXCL1P09341 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 IPPK-202ENST00000375522 882 ntTSL 3 BASIC11.36□□□□□ -0.59
CXCL1P09341 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 ADH5P3-201ENST00000433842 1137 ntBASIC11.36□□□□□ -0.59
CXCL1P09341 NME4-207ENST00000450036 985 ntTSL 3 BASIC11.36□□□□□ -0.59
CXCL1P09341 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC11.36□□□□□ -0.59
CXCL1P09341 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC11.36□□□□□ -0.59
CXCL1P09341 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC11.36□□□□□ -0.59
CXCL1P09341 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC11.36□□□□□ -0.59
CXCL1P09341 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC11.36□□□□□ -0.59
CXCL1P09341 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC11.36□□□□□ -0.59
CXCL1P09341 AC104692.2-201ENST00000603054 253 ntBASIC11.36□□□□□ -0.59
CXCL1P09341 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
CXCL1P09341 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC11.36□□□□□ -0.59
CXCL1P09341 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 AC026271.4-201ENST00000578214 1833 ntBASIC11.36□□□□□ -0.59
CXCL1P09341 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 VASH2-203ENST00000366965 3572 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC11.36□□□□□ -0.59
CXCL1P09341 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 TSN-201ENST00000389682 3420 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC11.36□□□□□ -0.59
CXCL1P09341 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
CXCL1P09341 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC11.36□□□□□ -0.59
CXCL1P09341 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 AOC3-201ENST00000308423 4026 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 POM121L4P-202ENST00000427789 1891 ntBASIC11.36□□□□□ -0.59
CXCL1P09341 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC11.35□□□□□ -0.59
CXCL1P09341 PRKCG-201ENST00000263431 3133 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 RBM10-206ENST00000628161 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC11.35□□□□□ -0.59
CXCL1P09341 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
CXCL1P09341 MSH5-204ENST00000375755 3094 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
CXCL1P09341 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC11.35□□□□□ -0.59
CXCL1P09341 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 GAS8-220ENST00000620723 3308 ntTSL 2 BASIC11.35□□□□□ -0.59
CXCL1P09341 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 AL353705.2-201ENST00000428243 662 ntBASIC11.35□□□□□ -0.59
CXCL1P09341 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 SPCS2P4-201ENST00000436160 681 ntBASIC11.35□□□□□ -0.59
CXCL1P09341 KRT18P2-201ENST00000447938 1258 ntBASIC11.35□□□□□ -0.59
CXCL1P09341 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC11.35□□□□□ -0.59
CXCL1P09341 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC11.35□□□□□ -0.59
CXCL1P09341 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC11.35□□□□□ -0.59
CXCL1P09341 SLED1-202ENST00000512051 380 ntBASIC11.35□□□□□ -0.59
CXCL1P09341 IGHV3-62-201ENST00000520057 340 ntBASIC11.35□□□□□ -0.59
CXCL1P09341 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC11.35□□□□□ -0.59
CXCL1P09341 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC11.35□□□□□ -0.59
CXCL1P09341 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC11.35□□□□□ -0.59
CXCL1P09341 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC11.35□□□□□ -0.59
CXCL1P09341 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC11.35□□□□□ -0.59
CXCL1P09341 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC11.35□□□□□ -0.59
CXCL1P09341 LINC01225-203ENST00000563550 1244 ntBASIC11.35□□□□□ -0.59
CXCL1P09341 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC11.35□□□□□ -0.59
CXCL1P09341 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC11.35□□□□□ -0.59
CXCL1P09341 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC11.35□□□□□ -0.59
CXCL1P09341 AC055717.3-201ENST00000622967 595 ntBASIC11.35□□□□□ -0.59
CXCL1P09341 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
CXCL1P09341 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC11.35□□□□□ -0.59
CXCL1P09341 MFF-204ENST00000353339 2186 ntTSL 5 BASIC11.35□□□□□ -0.59
CXCL1P09341 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 AC124319.4-201ENST00000622931 2161 ntBASIC11.35□□□□□ -0.59
CXCL1P09341 LINC01024-201ENST00000499203 2769 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 CACNG3-201ENST00000005284 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 CST3-203ENST00000398411 3286 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CXCL1P09341 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC11.35□□□□□ -0.59
CXCL1P09341 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms