Protein–RNA interactions for Protein: P09326

CD48, CD48 antigen, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD48P09326 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.13■□□□□ 0.01
CD48P09326 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CD48P09326 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.13■□□□□ 0.01
CD48P09326 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.13■□□□□ 0.01
CD48P09326 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CD48P09326 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.13■□□□□ 0.01
CD48P09326 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.13■□□□□ 0.01
CD48P09326 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.13■□□□□ 0.01
CD48P09326 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.13■□□□□ 0.01
CD48P09326 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.13■□□□□ 0.01
CD48P09326 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.13■□□□□ 0.01
CD48P09326 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.13■□□□□ 0.01
CD48P09326 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 AC090643.2-201ENST00000623442 2029 ntBASIC15.13■□□□□ 0.01
CD48P09326 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.13■□□□□ 0.01
CD48P09326 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.13■□□□□ 0.01
CD48P09326 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC15.13■□□□□ 0.01
CD48P09326 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CD48P09326 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CD48P09326 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.12■□□□□ 0.01
CD48P09326 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.12■□□□□ 0.01
CD48P09326 BEND3P1-201ENST00000421591 1944 ntBASIC15.12■□□□□ 0.01
CD48P09326 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.12■□□□□ 0.01
CD48P09326 BOLA2P3-201ENST00000404566 256 ntBASIC15.12■□□□□ 0.01
CD48P09326 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 AC099336.1-201ENST00000417053 1171 ntBASIC15.12■□□□□ 0.01
CD48P09326 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.12■□□□□ 0.01
CD48P09326 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 AL035414.1-201ENST00000451327 857 ntBASIC15.12■□□□□ 0.01
CD48P09326 ACA64.2-201ENST00000459014 129 ntBASIC15.12■□□□□ 0.01
CD48P09326 AC119751.2-201ENST00000504529 210 ntBASIC15.12■□□□□ 0.01
CD48P09326 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
CD48P09326 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 HILS1-202ENST00000545329 423 ntBASIC15.12■□□□□ 0.01
CD48P09326 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CD48P09326 AC132192.2-201ENST00000596206 1147 ntBASIC15.12■□□□□ 0.01
CD48P09326 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
CD48P09326 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CD48P09326 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.12■□□□□ 0.01
CD48P09326 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD48P09326 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD48P09326 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD48P09326 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CD48P09326 AL359183.1-201ENST00000623796 2132 ntBASIC15.11■□□□□ 0.01
CD48P09326 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC15.11■□□□□ 0.01
CD48P09326 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD48P09326 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD48P09326 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD48P09326 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.11■□□□□ 0.01
CD48P09326 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD48P09326 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
CD48P09326 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD48P09326 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD48P09326 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms