Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL3A1P02461 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC18.83■□□□□ 0.61
COL3A1P02461 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL3A1P02461 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
COL3A1P02461 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
COL3A1P02461 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL3A1P02461 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL3A1P02461 INTS4P1-203ENST00000641008 3683 ntBASIC18.83■□□□□ 0.61
COL3A1P02461 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC18.83■□□□□ 0.6
COL3A1P02461 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.83■□□□□ 0.6
COL3A1P02461 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
COL3A1P02461 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC18.83■□□□□ 0.6
COL3A1P02461 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 RGS5-216ENST00000449680 788 ntTSL 3 BASIC18.83■□□□□ 0.6
COL3A1P02461 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC18.83■□□□□ 0.6
COL3A1P02461 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC18.83■□□□□ 0.6
COL3A1P02461 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC18.83■□□□□ 0.6
COL3A1P02461 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC18.83■□□□□ 0.6
COL3A1P02461 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC18.83■□□□□ 0.6
COL3A1P02461 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC18.83■□□□□ 0.6
COL3A1P02461 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC18.83■□□□□ 0.6
COL3A1P02461 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC18.83■□□□□ 0.6
COL3A1P02461 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL3A1P02461 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC18.82■□□□□ 0.6
COL3A1P02461 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL3A1P02461 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC18.82■□□□□ 0.6
COL3A1P02461 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
COL3A1P02461 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC18.82■□□□□ 0.6
COL3A1P02461 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC18.82■□□□□ 0.6
COL3A1P02461 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.82■□□□□ 0.6
COL3A1P02461 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC18.82■□□□□ 0.6
COL3A1P02461 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL3A1P02461 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC18.82■□□□□ 0.6
COL3A1P02461 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC18.82■□□□□ 0.6
COL3A1P02461 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC18.82■□□□□ 0.6
COL3A1P02461 IGHV1-12-201ENST00000518307 205 ntBASIC18.82■□□□□ 0.6
COL3A1P02461 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
COL3A1P02461 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC18.82■□□□□ 0.6
COL3A1P02461 IQSEC3P1-201ENST00000538799 536 ntBASIC18.82■□□□□ 0.6
COL3A1P02461 AC138701.2-201ENST00000553634 226 ntBASIC18.82■□□□□ 0.6
COL3A1P02461 RN7SL190P-201ENST00000582519 257 ntBASIC18.82■□□□□ 0.6
COL3A1P02461 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC18.82■□□□□ 0.6
COL3A1P02461 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC18.82■□□□□ 0.6
COL3A1P02461 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
COL3A1P02461 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.82■□□□□ 0.6
COL3A1P02461 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
COL3A1P02461 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.82■□□□□ 0.6
COL3A1P02461 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL3A1P02461 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC18.82■□□□□ 0.6
COL3A1P02461 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COL3A1P02461 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC18.81■□□□□ 0.6
COL3A1P02461 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.81■□□□□ 0.6
COL3A1P02461 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC18.81■□□□□ 0.6
COL3A1P02461 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 SCARNA12-201ENST00000459155 270 ntBASIC18.81■□□□□ 0.6
COL3A1P02461 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.81■□□□□ 0.6
COL3A1P02461 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms