Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL133215.2-201ENST00000609242 977 ntBASIC14.62□□□□□ -0.07
SHOX2O60902 AC120114.3-201ENST00000611923 658 ntBASIC14.62□□□□□ -0.07
SHOX2O60902 AC005702.4-201ENST00000618393 416 ntBASIC14.62□□□□□ -0.07
SHOX2O60902 WDR66-202ENST00000397454 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 COPS7B-201ENST00000350033 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 TBC1D3P2-203ENST00000581291 2088 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC14.62□□□□□ -0.07
SHOX2O60902 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC14.62□□□□□ -0.07
SHOX2O60902 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
SHOX2O60902 HLA-E-201ENST00000376630 2601 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
SHOX2O60902 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 HOXB13-201ENST00000290295 3467 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 DNM1P41-201ENST00000623634 3350 ntBASIC14.61□□□□□ -0.07
SHOX2O60902 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SHOX2O60902 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.61□□□□□ -0.07
SHOX2O60902 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SHOX2O60902 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.61□□□□□ -0.07
SHOX2O60902 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
SHOX2O60902 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 USP17L6P-201ENST00000382470 1197 ntBASIC14.61□□□□□ -0.07
SHOX2O60902 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
SHOX2O60902 SPCS2P4-201ENST00000436160 681 ntBASIC14.61□□□□□ -0.07
SHOX2O60902 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
SHOX2O60902 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.61□□□□□ -0.07
SHOX2O60902 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.61□□□□□ -0.07
SHOX2O60902 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC14.61□□□□□ -0.07
SHOX2O60902 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.61□□□□□ -0.07
SHOX2O60902 JPT2-214ENST00000569765 782 ntTSL 2 BASIC14.61□□□□□ -0.07
SHOX2O60902 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.61□□□□□ -0.07
SHOX2O60902 AL121894.2-201ENST00000602977 491 ntBASIC14.61□□□□□ -0.07
SHOX2O60902 AC027601.4-201ENST00000611259 610 ntBASIC14.61□□□□□ -0.07
SHOX2O60902 AC084121.4-201ENST00000641598 221 ntBASIC14.61□□□□□ -0.07
SHOX2O60902 AF228730.8-201ENST00000642140 221 ntBASIC14.61□□□□□ -0.07
SHOX2O60902 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
SHOX2O60902 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 TMOD1-202ENST00000375175 2516 ntTSL 2 BASIC14.61□□□□□ -0.07
SHOX2O60902 FAM76A-204ENST00000373954 3567 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 MARCH10-201ENST00000311269 3090 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
SHOX2O60902 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
SHOX2O60902 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.61□□□□□ -0.07
SHOX2O60902 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC14.61□□□□□ -0.07
SHOX2O60902 DUSP14-205ENST00000614411 2207 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SHOX2O60902 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC14.61□□□□□ -0.07
SHOX2O60902 AC139712.1-201ENST00000378256 1875 ntBASIC14.61□□□□□ -0.07
SHOX2O60902 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 CSTF2-203ENST00000415585 2074 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 WDR92-201ENST00000295121 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHOX2O60902 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
SHOX2O60902 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.6□□□□□ -0.07
SHOX2O60902 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.6□□□□□ -0.07
SHOX2O60902 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
SHOX2O60902 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.6□□□□□ -0.07
SHOX2O60902 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 MAP2-201ENST00000199940 2241 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SHOX2O60902 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.6□□□□□ -0.07
SHOX2O60902 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14.6□□□□□ -0.07
SHOX2O60902 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14.6□□□□□ -0.07
SHOX2O60902 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 MIR940-201ENST00000401276 94 ntBASIC14.6□□□□□ -0.07
SHOX2O60902 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms