Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AC006001.1-201ENST00000325130 474 ntBASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AL136309.1-201ENST00000403917 691 ntBASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 KRT43P-201ENST00000434019 910 ntBASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AC073413.1-201ENST00000603927 732 ntBASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AC027601.3-201ENST00000622907 509 ntBASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS29Q9UBQ0 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 MIR3197-201ENST00000582241 73 ntBASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 ZACNP1-201ENST00000612259 710 ntBASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 AC064801.2-201ENST00000625052 1303 ntBASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.03□□□□□ -0.16
VPS29Q9UBQ0 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms