Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 CD8B2-202ENST00000417670 633 ntBASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 AL591846.1-201ENST00000451736 433 ntBASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 AP001002.3-201ENST00000623482 206 ntBASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 MRPL37P1-201ENST00000592451 1337 ntBASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 MESTP3-201ENST00000503460 968 ntBASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 AC139749.1-202ENST00000617529 3139 ntBASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 AC015818.8-201ENST00000587907 1519 ntBASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP4CQ96CF2 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 AL138725.1-201ENST00000407347 1314 ntBASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms