Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 AC079178.1-201ENST00000420915 656 ntBASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 AC244157.2-201ENST00000616239 1006 ntBASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 AC027601.5-201ENST00000624065 2482 ntBASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 AC006504.5-208ENST00000588784 2401 ntBASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SYNE3Q6ZMZ3 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 AL023775.1-201ENST00000454907 1746 ntBASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 CICP12-201ENST00000455801 843 ntBASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 MIR4741-201ENST00000579822 90 ntBASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 MIR4259-201ENST00000584466 101 ntBASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 KHSRPP1-201ENST00000427983 1768 ntBASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
SYNE3Q6ZMZ3 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 AL590440.2-201ENST00000641973 1595 ntBASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 AC010141.1-201ENST00000411585 623 ntBASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 RNA5SP412-201ENST00000516234 123 ntBASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 EEF1DP1-201ENST00000585891 896 ntBASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 MIR6074-201ENST00000612054 107 ntBASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms