Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 Z69890.1-201ENST00000382990 339 ntBASIC14.12□□□□□ -0.15
COL28A1Q2UY09 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 AC100827.2-201ENST00000563214 1194 ntBASIC14.12□□□□□ -0.15
COL28A1Q2UY09 AL118516.1-201ENST00000564152 670 ntBASIC14.12□□□□□ -0.15
COL28A1Q2UY09 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 RPL17P45-201ENST00000586289 509 ntBASIC14.12□□□□□ -0.15
COL28A1Q2UY09 AC005324.6-201ENST00000587972 613 ntBASIC14.12□□□□□ -0.15
COL28A1Q2UY09 HKR1-225ENST00000592168 566 ntTSL 4 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 AC126365.1-201ENST00000578585 1514 ntBASIC14.11□□□□□ -0.15
COL28A1Q2UY09 MYO15B-237ENST00000642007 4893 ntBASIC14.11□□□□□ -0.15
COL28A1Q2UY09 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 POM121L8P-201ENST00000417732 1281 ntBASIC14.11□□□□□ -0.15
COL28A1Q2UY09 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 POM121L9P-203ENST00000441984 1285 ntBASIC14.11□□□□□ -0.15
COL28A1Q2UY09 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 AC106820.3-201ENST00000561653 397 ntBASIC14.11□□□□□ -0.15
COL28A1Q2UY09 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 SNORD3B-2-202ENST00000571722 791 ntBASIC14.11□□□□□ -0.15
COL28A1Q2UY09 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 AL162426.1-201ENST00000624141 743 ntBASIC14.11□□□□□ -0.15
COL28A1Q2UY09 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.11□□□□□ -0.15
COL28A1Q2UY09 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms