Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
AP3S2P59780 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
AP3S2P59780 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
AP3S2P59780 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
AP3S2P59780 HPSE-201ENST00000311412 4615 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
AP3S2P59780 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.62□□□□□ -0.39
AP3S2P59780 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
AP3S2P59780 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
AP3S2P59780 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC12.62□□□□□ -0.39
AP3S2P59780 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC12.62□□□□□ -0.39
AP3S2P59780 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC12.62□□□□□ -0.39
AP3S2P59780 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
AP3S2P59780 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC12.62□□□□□ -0.39
AP3S2P59780 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
AP3S2P59780 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
AP3S2P59780 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
AP3S2P59780 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
AP3S2P59780 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
AP3S2P59780 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
AP3S2P59780 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
AP3S2P59780 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.61□□□□□ -0.39
AP3S2P59780 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
AP3S2P59780 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
AP3S2P59780 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
AP3S2P59780 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
AP3S2P59780 AL035456.1-201ENST00000456064 1369 ntBASIC12.61□□□□□ -0.39
AP3S2P59780 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
AP3S2P59780 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
AP3S2P59780 AL031284.1-201ENST00000419297 478 ntBASIC12.61□□□□□ -0.39
AP3S2P59780 HLA-K-203ENST00000430151 1046 ntBASIC12.61□□□□□ -0.39
AP3S2P59780 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC12.61□□□□□ -0.39
AP3S2P59780 IGHV3-22-201ENST00000520721 359 ntBASIC12.61□□□□□ -0.39
AP3S2P59780 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
AP3S2P59780 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC12.61□□□□□ -0.39
AP3S2P59780 BANF1P1-201ENST00000553684 263 ntBASIC12.61□□□□□ -0.39
AP3S2P59780 AC026120.1-201ENST00000611536 926 ntBASIC12.61□□□□□ -0.39
AP3S2P59780 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC12.61□□□□□ -0.39
AP3S2P59780 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC12.61□□□□□ -0.39
AP3S2P59780 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 PASK-203ENST00000403638 5161 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
AP3S2P59780 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC12.61□□□□□ -0.39
AP3S2P59780 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
AP3S2P59780 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
AP3S2P59780 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
AP3S2P59780 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
AP3S2P59780 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC12.6□□□□□ -0.39
AP3S2P59780 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
AP3S2P59780 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC12.6□□□□□ -0.39
AP3S2P59780 AC015688.4-201ENST00000580780 1647 ntBASIC12.6□□□□□ -0.39
AP3S2P59780 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
AP3S2P59780 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
AP3S2P59780 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
AP3S2P59780 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
AP3S2P59780 BEX3-201ENST00000361298 921 ntTSL 2 BASIC12.6□□□□□ -0.39
AP3S2P59780 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
AP3S2P59780 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
AP3S2P59780 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
AP3S2P59780 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
AP3S2P59780 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC12.6□□□□□ -0.39
AP3S2P59780 AC079140.1-201ENST00000508039 487 ntBASIC12.6□□□□□ -0.39
AP3S2P59780 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC12.6□□□□□ -0.39
AP3S2P59780 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC12.6□□□□□ -0.39
AP3S2P59780 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC12.6□□□□□ -0.39
AP3S2P59780 AC000095.1-201ENST00000603208 874 ntBASIC12.6□□□□□ -0.39
AP3S2P59780 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.6□□□□□ -0.39
AP3S2P59780 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
AP3S2P59780 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
AP3S2P59780 VPS51-217ENST00000639871 243 ntTSL 5 BASIC12.6□□□□□ -0.39
AP3S2P59780 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
AP3S2P59780 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms