Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP98P52948 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP98P52948 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC17.69■□□□□ 0.42
NUP98P52948 GEMIN8P4-201ENST00000380526 729 ntBASIC17.69■□□□□ 0.42
NUP98P52948 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC17.69■□□□□ 0.42
NUP98P52948 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC17.69■□□□□ 0.42
NUP98P52948 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC17.69■□□□□ 0.42
NUP98P52948 GNG10P1-201ENST00000452289 199 ntBASIC17.69■□□□□ 0.42
NUP98P52948 KRT18P15-201ENST00000458108 1291 ntBASIC17.69■□□□□ 0.42
NUP98P52948 PPOX-204ENST00000462866 473 ntTSL 5 BASIC17.69■□□□□ 0.42
NUP98P52948 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC17.69■□□□□ 0.42
NUP98P52948 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP98P52948 CD44-224ENST00000526669 870 ntTSL 5 BASIC17.69■□□□□ 0.42
NUP98P52948 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
NUP98P52948 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC17.69■□□□□ 0.42
NUP98P52948 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC17.69■□□□□ 0.42
NUP98P52948 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP98P52948 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP98P52948 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.69■□□□□ 0.42
NUP98P52948 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC17.69■□□□□ 0.42
NUP98P52948 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
NUP98P52948 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
NUP98P52948 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP98P52948 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP98P52948 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP98P52948 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
NUP98P52948 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP98P52948 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC17.68■□□□□ 0.42
NUP98P52948 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
NUP98P52948 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
NUP98P52948 AC234644.1-201ENST00000406065 370 ntBASIC17.68■□□□□ 0.42
NUP98P52948 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC17.68■□□□□ 0.42
NUP98P52948 AC244197.1-201ENST00000456494 951 ntBASIC17.68■□□□□ 0.42
NUP98P52948 GOLGA2P8-201ENST00000505201 779 ntBASIC17.68■□□□□ 0.42
NUP98P52948 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC17.68■□□□□ 0.42
NUP98P52948 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC17.68■□□□□ 0.42
NUP98P52948 F11R-204ENST00000537746 1245 ntTSL 2 BASIC17.68■□□□□ 0.42
NUP98P52948 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC17.68■□□□□ 0.42
NUP98P52948 DLK1-205ENST00000556051 469 ntTSL 2 BASIC17.68■□□□□ 0.42
NUP98P52948 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 AL049840.2-201ENST00000602722 535 ntBASIC17.68■□□□□ 0.42
NUP98P52948 AL136982.5-201ENST00000605222 294 ntBASIC17.68■□□□□ 0.42
NUP98P52948 HMGB1P24-201ENST00000611897 328 ntBASIC17.68■□□□□ 0.42
NUP98P52948 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
NUP98P52948 RPL13AP3-202ENST00000494676 1473 ntBASIC17.68■□□□□ 0.42
NUP98P52948 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.68■□□□□ 0.42
NUP98P52948 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.68■□□□□ 0.42
NUP98P52948 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
NUP98P52948 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
NUP98P52948 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC17.68■□□□□ 0.42
NUP98P52948 ALG1L7P-201ENST00000502317 768 ntBASIC17.68■□□□□ 0.42
NUP98P52948 RN7SKP155-201ENST00000516031 288 ntBASIC17.68■□□□□ 0.42
NUP98P52948 KRT18P37-201ENST00000520711 1282 ntBASIC17.68■□□□□ 0.42
NUP98P52948 AC092862.1-201ENST00000541534 533 ntBASIC17.68■□□□□ 0.42
NUP98P52948 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC17.68■□□□□ 0.42
NUP98P52948 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC17.68■□□□□ 0.42
NUP98P52948 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC17.68■□□□□ 0.42
NUP98P52948 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP98P52948 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
NUP98P52948 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.67■□□□□ 0.42
NUP98P52948 AC138761.6-201ENST00000583997 1423 ntBASIC17.67■□□□□ 0.42
NUP98P52948 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
NUP98P52948 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
NUP98P52948 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 AL390755.1-201ENST00000623716 2027 ntBASIC17.67■□□□□ 0.42
NUP98P52948 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.67■□□□□ 0.42
NUP98P52948 PIFO-201ENST00000369737 746 ntTSL 2 BASIC17.67■□□□□ 0.42
NUP98P52948 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC17.67■□□□□ 0.42
NUP98P52948 PFN2-212ENST00000490975 858 ntTSL 4 BASIC17.67■□□□□ 0.42
NUP98P52948 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 AL009176.1-201ENST00000607876 650 ntBASIC17.67■□□□□ 0.42
NUP98P52948 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC17.67■□□□□ 0.42
NUP98P52948 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
NUP98P52948 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
NUP98P52948 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
NUP98P52948 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP98P52948 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms