Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
COL18A1P39060 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
COL18A1P39060 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
COL18A1P39060 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
COL18A1P39060 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
COL18A1P39060 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.56■□□□□ 0.56
COL18A1P39060 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC18.56■□□□□ 0.56
COL18A1P39060 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL18A1P39060 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC18.56■□□□□ 0.56
COL18A1P39060 USP35-204ENST00000530267 2419 ntTSL 2 BASIC18.56■□□□□ 0.56
COL18A1P39060 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
COL18A1P39060 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL18A1P39060 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC18.56■□□□□ 0.56
COL18A1P39060 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC18.56■□□□□ 0.56
COL18A1P39060 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 RPL10-203ENST00000406022 748 ntTSL 3 BASIC18.56■□□□□ 0.56
COL18A1P39060 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
COL18A1P39060 AC006116.2-201ENST00000589958 988 ntBASIC18.56■□□□□ 0.56
COL18A1P39060 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL18A1P39060 FAM226B-201ENST00000602508 1490 ntBASIC18.56■□□□□ 0.56
COL18A1P39060 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 TUBB8P4-201ENST00000511806 1324 ntBASIC18.56■□□□□ 0.56
COL18A1P39060 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL18A1P39060 AC008536.3-201ENST00000623282 1599 ntBASIC18.56■□□□□ 0.56
COL18A1P39060 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL18A1P39060 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
COL18A1P39060 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL18A1P39060 VENTXP4-201ENST00000449029 958 ntBASIC18.55■□□□□ 0.56
COL18A1P39060 AC079250.1-201ENST00000456046 531 ntBASIC18.55■□□□□ 0.56
COL18A1P39060 IGHEP1-201ENST00000521393 651 ntBASIC18.55■□□□□ 0.56
COL18A1P39060 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC18.55■□□□□ 0.56
COL18A1P39060 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC18.55■□□□□ 0.56
COL18A1P39060 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC18.55■□□□□ 0.56
COL18A1P39060 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC18.55■□□□□ 0.56
COL18A1P39060 KRT8P34-201ENST00000577607 1044 ntBASIC18.55■□□□□ 0.56
COL18A1P39060 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL18A1P39060 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
COL18A1P39060 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.55■□□□□ 0.56
COL18A1P39060 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL18A1P39060 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
COL18A1P39060 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC18.55■□□□□ 0.56
COL18A1P39060 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
COL18A1P39060 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL18A1P39060 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL18A1P39060 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL18A1P39060 PAUPAR-201ENST00000630360 2965 ntBASIC18.55■□□□□ 0.56
COL18A1P39060 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL18A1P39060 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL18A1P39060 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC18.55■□□□□ 0.56
COL18A1P39060 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC18.55■□□□□ 0.56
COL18A1P39060 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC18.55■□□□□ 0.56
COL18A1P39060 AC078814.4-201ENST00000546650 327 ntBASIC18.55■□□□□ 0.56
COL18A1P39060 EMC4-208ENST00000559078 599 ntTSL 3 BASIC18.55■□□□□ 0.56
COL18A1P39060 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC18.55■□□□□ 0.56
COL18A1P39060 KF455155.1-201ENST00000604493 303 ntBASIC18.55■□□□□ 0.56
COL18A1P39060 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL18A1P39060 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC18.55■□□□□ 0.56
COL18A1P39060 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC18.54■□□□□ 0.56
COL18A1P39060 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL18A1P39060 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL18A1P39060 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC18.54■□□□□ 0.56
COL18A1P39060 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC18.54■□□□□ 0.56
COL18A1P39060 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC18.54■□□□□ 0.56
COL18A1P39060 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL18A1P39060 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
COL18A1P39060 CTSL-202ENST00000342020 933 ntTSL 2 BASIC18.54■□□□□ 0.56
COL18A1P39060 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC18.54■□□□□ 0.56
COL18A1P39060 AL136084.1-201ENST00000449172 318 ntBASIC18.54■□□□□ 0.56
COL18A1P39060 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC18.54■□□□□ 0.56
COL18A1P39060 HNRNPA1P16-201ENST00000575692 955 ntBASIC18.54■□□□□ 0.56
COL18A1P39060 MIR8071-1-201ENST00000616769 65 ntBASIC18.54■□□□□ 0.56
COL18A1P39060 MIR8071-2-201ENST00000616772 65 ntBASIC18.54■□□□□ 0.56
COL18A1P39060 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL18A1P39060 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL18A1P39060 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC18.54■□□□□ 0.56
COL18A1P39060 POR-201ENST00000394893 2532 ntTSL 5 BASIC18.54■□□□□ 0.56
COL18A1P39060 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
COL18A1P39060 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL18A1P39060 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL18A1P39060 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL18A1P39060 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL18A1P39060 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC18.53■□□□□ 0.56
COL18A1P39060 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
COL18A1P39060 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL18A1P39060 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC18.53■□□□□ 0.56
COL18A1P39060 PHBP10-201ENST00000416467 784 ntBASIC18.53■□□□□ 0.56
COL18A1P39060 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC18.53■□□□□ 0.56
COL18A1P39060 HIST1H2APS2-201ENST00000454426 370 ntBASIC18.53■□□□□ 0.56
COL18A1P39060 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC18.53■□□□□ 0.56
COL18A1P39060 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms