Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
COL6A2P12110 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
COL6A2P12110 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.49□□□□□ -0.09
COL6A2P12110 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 ACTG1P3-201ENST00000431775 1114 ntBASIC14.49□□□□□ -0.09
COL6A2P12110 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.49□□□□□ -0.09
COL6A2P12110 AC011495.1-201ENST00000498085 584 ntBASIC14.49□□□□□ -0.09
COL6A2P12110 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.49□□□□□ -0.09
COL6A2P12110 AL391280.1-201ENST00000506969 1062 ntBASIC14.49□□□□□ -0.09
COL6A2P12110 AC005586.2-201ENST00000563946 837 ntBASIC14.49□□□□□ -0.09
COL6A2P12110 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL6A2P12110 AL355385.1-201ENST00000606123 409 ntBASIC14.49□□□□□ -0.09
COL6A2P12110 AC104506.1-201ENST00000609247 429 ntBASIC14.49□□□□□ -0.09
COL6A2P12110 AC132938.4-201ENST00000623835 848 ntBASIC14.49□□□□□ -0.09
COL6A2P12110 AL033527.5-201ENST00000641382 801 ntBASIC14.49□□□□□ -0.09
COL6A2P12110 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A2P12110 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL6A2P12110 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
COL6A2P12110 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A2P12110 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A2P12110 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A2P12110 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A2P12110 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A2P12110 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
COL6A2P12110 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL6A2P12110 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 AC134312.5-201ENST00000568031 1313 ntBASIC14.48□□□□□ -0.09
COL6A2P12110 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A2P12110 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 AC126335.2-201ENST00000623362 4637 ntBASIC14.48□□□□□ -0.09
COL6A2P12110 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
COL6A2P12110 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL6A2P12110 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
COL6A2P12110 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.48□□□□□ -0.09
COL6A2P12110 AC004945.1-201ENST00000416738 983 ntBASIC14.48□□□□□ -0.09
COL6A2P12110 AL161932.2-201ENST00000435436 679 ntBASIC14.48□□□□□ -0.09
COL6A2P12110 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.48□□□□□ -0.09
COL6A2P12110 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.48□□□□□ -0.09
COL6A2P12110 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 TSPY16P-201ENST00000449843 468 ntBASIC14.48□□□□□ -0.09
COL6A2P12110 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 AC068587.3-201ENST00000526613 355 ntBASIC14.48□□□□□ -0.09
COL6A2P12110 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.48□□□□□ -0.09
COL6A2P12110 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A2P12110 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.48□□□□□ -0.09
COL6A2P12110 AC008494.3-201ENST00000606615 944 ntBASIC14.48□□□□□ -0.09
COL6A2P12110 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL6A2P12110 AL023775.1-201ENST00000454907 1746 ntBASIC14.48□□□□□ -0.09
COL6A2P12110 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
COL6A2P12110 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
COL6A2P12110 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.48□□□□□ -0.09
COL6A2P12110 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
COL6A2P12110 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
COL6A2P12110 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
COL6A2P12110 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A2P12110 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A2P12110 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A2P12110 KRT8P28-201ENST00000433288 1390 ntBASIC14.47□□□□□ -0.09
COL6A2P12110 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms