Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TNFP01375 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TNFP01375 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.23□□□□□ -0.13
TNFP01375 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
TNFP01375 MYADML-201ENST00000474610 2147 ntBASIC14.23□□□□□ -0.13
TNFP01375 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.23□□□□□ -0.13
TNFP01375 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.22□□□□□ -0.13
TNFP01375 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 AC091046.1-201ENST00000331871 207 ntBASIC14.22□□□□□ -0.13
TNFP01375 BANF1P3-201ENST00000412556 261 ntBASIC14.22□□□□□ -0.13
TNFP01375 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC14.22□□□□□ -0.13
TNFP01375 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.22□□□□□ -0.13
TNFP01375 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC14.22□□□□□ -0.13
TNFP01375 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 DUX4L50-201ENST00000455245 715 ntBASIC14.22□□□□□ -0.13
TNFP01375 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 RN7SL67P-201ENST00000492147 296 ntBASIC14.22□□□□□ -0.13
TNFP01375 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 SORD2P-201ENST00000558556 1069 ntBASIC14.22□□□□□ -0.13
TNFP01375 AC140658.4-201ENST00000561990 352 ntBASIC14.22□□□□□ -0.13
TNFP01375 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC14.22□□□□□ -0.13
TNFP01375 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC14.22□□□□□ -0.13
TNFP01375 HPN-206ENST00000597419 1212 ntTSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 CDK7-214ENST00000626796 358 ntTSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 AC128714.1-201ENST00000637035 887 ntBASIC14.22□□□□□ -0.13
TNFP01375 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
TNFP01375 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC14.22□□□□□ -0.13
TNFP01375 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.22□□□□□ -0.13
TNFP01375 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
TNFP01375 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TNFP01375 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.21□□□□□ -0.13
TNFP01375 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.21□□□□□ -0.13
TNFP01375 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC14.21□□□□□ -0.13
TNFP01375 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.21□□□□□ -0.13
TNFP01375 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
TNFP01375 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.21□□□□□ -0.13
TNFP01375 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.21□□□□□ -0.13
TNFP01375 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
TNFP01375 OR2K2-202ENST00000374428 1038 ntBASIC14.21□□□□□ -0.13
TNFP01375 UFM1-202ENST00000379649 846 ntTSL 4 BASIC14.21□□□□□ -0.13
TNFP01375 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
TNFP01375 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TNFP01375 AL592076.1-201ENST00000424448 303 ntBASIC14.21□□□□□ -0.13
TNFP01375 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.21□□□□□ -0.13
TNFP01375 AC019193.1-201ENST00000506678 823 ntBASIC14.21□□□□□ -0.13
TNFP01375 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC14.21□□□□□ -0.13
TNFP01375 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.21□□□□□ -0.13
TNFP01375 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC14.21□□□□□ -0.13
TNFP01375 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
TNFP01375 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
TNFP01375 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms