Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 BCRP2-202ENST00000447763 634 ntBASIC11.89□□□□□ -0.51
FOXA2Q9Y261 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 BCRP6-201ENST00000510112 632 ntBASIC11.89□□□□□ -0.51
FOXA2Q9Y261 BCRP7-201ENST00000511549 544 ntBASIC11.89□□□□□ -0.51
FOXA2Q9Y261 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 AC145423.3-201ENST00000615987 467 ntBASIC11.89□□□□□ -0.51
FOXA2Q9Y261 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 AC126335.2-201ENST00000623362 4637 ntBASIC11.89□□□□□ -0.51
FOXA2Q9Y261 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 GUK1-206ENST00000366723 845 ntTSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 BOLA2P3-201ENST00000404566 256 ntBASIC11.88□□□□□ -0.51
FOXA2Q9Y261 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 AC234783.1-201ENST00000441761 496 ntBASIC11.88□□□□□ -0.51
FOXA2Q9Y261 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 NAA50-208ENST00000497255 789 ntTSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 AC106760.1-201ENST00000508690 800 ntBASIC11.88□□□□□ -0.51
FOXA2Q9Y261 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 HPD-204ENST00000543163 1709 ntTSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA2Q9Y261 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC11.88□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms