Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 AL049840.4-201ENST00000602422 811 ntBASIC14.3□□□□□ -0.12
VPS4AQ9UN37 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 MIR6727-201ENST00000620702 65 ntBASIC14.3□□□□□ -0.12
VPS4AQ9UN37 ABBA01031663.1-201ENST00000635630 790 ntBASIC14.3□□□□□ -0.12
VPS4AQ9UN37 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 AC010327.5-201ENST00000586923 3061 ntBASIC14.29□□□□□ -0.12
VPS4AQ9UN37 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 AC026954.1-201ENST00000429771 1293 ntBASIC14.29□□□□□ -0.12
VPS4AQ9UN37 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 AC026410.3-201ENST00000514280 936 ntBASIC14.29□□□□□ -0.12
VPS4AQ9UN37 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 AC055811.4-201ENST00000624039 1754 ntBASIC14.29□□□□□ -0.12
VPS4AQ9UN37 HSPA7-201ENST00000445535 1927 ntBASIC14.29□□□□□ -0.12
VPS4AQ9UN37 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS4AQ9UN37 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms