Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 MYB-201ENST00000316528 3571 ntTSL 5 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 MYB-241ENST00000616088 3573 ntTSL 5 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 RN7SL494P-201ENST00000461517 304 ntBASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 AC093826.1-201ENST00000508655 993 ntBASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
SHROOM4Q9ULL8 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
SHROOM4Q9ULL8 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC27.39■■□□□ 1.97
SHROOM4Q9ULL8 AC009093.10-201ENST00000641956 1442 ntBASIC27.39■■□□□ 1.97
SHROOM4Q9ULL8 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC27.39■■□□□ 1.97
SHROOM4Q9ULL8 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
SHROOM4Q9ULL8 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 RN7SKP109-201ENST00000410592 316 ntBASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 MIR6746-201ENST00000620971 63 ntBASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 HMGB1P24-201ENST00000611897 328 ntBASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC27.38■■□□□ 1.97
SHROOM4Q9ULL8 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 SERBP1P2-201ENST00000436888 1164 ntBASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 AC083801.1-201ENST00000491689 358 ntBASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 AC068867.1-201ENST00000559855 150 ntBASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC27.37■■□□□ 1.97
SHROOM4Q9ULL8 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms