Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 AC087386.2-201ENST00000623212 4637 ntBASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
NUP54Q7Z3B4 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.23
NUP54Q7Z3B4 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
NUP54Q7Z3B4 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.58□□□□□ -0.23
NUP54Q7Z3B4 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
NUP54Q7Z3B4 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
NUP54Q7Z3B4 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 AL354702.1-201ENST00000442006 1960 ntBASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 AC015656.1-201ENST00000624209 3578 ntBASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 MIR326-201ENST00000362220 95 ntBASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 PFN1P12-201ENST00000455938 534 ntBASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NUP54Q7Z3B4 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AGGF1P1-201ENST00000509500 2073 ntBASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms