Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CTR9Q6PD62 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CTR9Q6PD62 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CTR9Q6PD62 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CTR9Q6PD62 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CTR9Q6PD62 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 KRT18P36-201ENST00000411618 1276 ntBASIC17.36■□□□□ 0.37
CTR9Q6PD62 CMC1-204ENST00000423894 549 ntTSL 2 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 RCC2P8-201ENST00000502779 1035 ntBASIC17.36■□□□□ 0.37
CTR9Q6PD62 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 AL021578.1-201ENST00000613646 709 ntBASIC17.36■□□□□ 0.37
CTR9Q6PD62 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTR9Q6PD62 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CTR9Q6PD62 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 HNRNPA1P41-201ENST00000397777 928 ntBASIC17.35■□□□□ 0.37
CTR9Q6PD62 SLC25A24P2-201ENST00000415059 510 ntBASIC17.35■□□□□ 0.37
CTR9Q6PD62 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 AC003686.1-201ENST00000550956 1034 ntBASIC17.35■□□□□ 0.37
CTR9Q6PD62 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 MIR3619-201ENST00000579667 83 ntBASIC17.35■□□□□ 0.37
CTR9Q6PD62 KLK3-207ENST00000595952 969 ntTSL 3 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 AC091544.8-201ENST00000619490 361 ntBASIC17.35■□□□□ 0.37
CTR9Q6PD62 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 AC008132.1-202ENST00000342005 1389 ntBASIC17.35■□□□□ 0.37
CTR9Q6PD62 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CTR9Q6PD62 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTR9Q6PD62 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTR9Q6PD62 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms