Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA4P78363 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 AC008723.1-201ENST00000506922 207 ntBASIC12.6□□□□□ -0.39
ABCA4P78363 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA4P78363 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA4P78363 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA4P78363 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA4P78363 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC12.6□□□□□ -0.39
ABCA4P78363 AC006158.1-201ENST00000610661 249 ntBASIC12.6□□□□□ -0.39
ABCA4P78363 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC12.6□□□□□ -0.39
ABCA4P78363 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC12.6□□□□□ -0.39
ABCA4P78363 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
ABCA4P78363 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 AC018529.2-202ENST00000611482 3087 ntBASIC12.6□□□□□ -0.39
ABCA4P78363 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
ABCA4P78363 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
ABCA4P78363 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
ABCA4P78363 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA4P78363 OR2R1P-201ENST00000441404 914 ntBASIC12.6□□□□□ -0.39
ABCA4P78363 AP000358.1-201ENST00000456260 156 ntBASIC12.6□□□□□ -0.39
ABCA4P78363 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 AC131206.1-201ENST00000538078 1211 ntBASIC12.6□□□□□ -0.39
ABCA4P78363 RBM8B-201ENST00000555532 525 ntBASIC12.6□□□□□ -0.39
ABCA4P78363 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
ABCA4P78363 AC127024.7-201ENST00000625101 200 ntBASIC12.6□□□□□ -0.39
ABCA4P78363 CASP16P-204ENST00000635032 809 ntBASIC12.6□□□□□ -0.39
ABCA4P78363 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
ABCA4P78363 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
ABCA4P78363 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
ABCA4P78363 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.59□□□□□ -0.39
ABCA4P78363 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 AL512430.1-201ENST00000392575 860 ntBASIC12.59□□□□□ -0.39
ABCA4P78363 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 PPOX-204ENST00000462866 473 ntTSL 5 BASIC12.59□□□□□ -0.39
ABCA4P78363 REEP5-205ENST00000504247 480 ntTSL 5 BASIC12.59□□□□□ -0.39
ABCA4P78363 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC12.59□□□□□ -0.39
ABCA4P78363 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
ABCA4P78363 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC12.59□□□□□ -0.39
ABCA4P78363 AC027237.1-201ENST00000560942 655 ntBASIC12.59□□□□□ -0.39
ABCA4P78363 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC12.59□□□□□ -0.39
ABCA4P78363 MIR4649-201ENST00000582839 64 ntBASIC12.59□□□□□ -0.39
ABCA4P78363 AP003392.6-201ENST00000607709 325 ntBASIC12.59□□□□□ -0.39
ABCA4P78363 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC12.59□□□□□ -0.39
ABCA4P78363 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC12.59□□□□□ -0.39
ABCA4P78363 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC12.59□□□□□ -0.39
ABCA4P78363 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
ABCA4P78363 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.59□□□□□ -0.39
ABCA4P78363 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
ABCA4P78363 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
ABCA4P78363 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC12.59□□□□□ -0.39
ABCA4P78363 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms