Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC23.67■■□□□ 1.38
CUX1P39880 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CUX1P39880 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
CUX1P39880 WARS-203ENST00000358655 2466 ntTSL 2 BASIC23.67■■□□□ 1.38
CUX1P39880 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CUX1P39880 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CUX1P39880 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CUX1P39880 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CUX1P39880 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
CUX1P39880 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC23.66■■□□□ 1.38
CUX1P39880 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
CUX1P39880 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC23.66■■□□□ 1.38
CUX1P39880 PES1P2-201ENST00000449745 1735 ntBASIC23.66■■□□□ 1.38
CUX1P39880 HPD-204ENST00000543163 1709 ntTSL 5 BASIC23.66■■□□□ 1.38
CUX1P39880 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC23.66■■□□□ 1.38
CUX1P39880 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC23.66■■□□□ 1.38
CUX1P39880 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC23.66■■□□□ 1.38
CUX1P39880 RNLS-203ENST00000437752 525 ntTSL 2 BASIC23.66■■□□□ 1.38
CUX1P39880 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC23.66■■□□□ 1.38
CUX1P39880 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC23.66■■□□□ 1.38
CUX1P39880 MTHFR-210ENST00000641407 2387 ntBASIC23.66■■□□□ 1.38
CUX1P39880 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC23.66■■□□□ 1.38
CUX1P39880 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUX1P39880 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 KRT18P15-201ENST00000458108 1291 ntBASIC23.65■■□□□ 1.38
CUX1P39880 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC23.65■■□□□ 1.38
CUX1P39880 AC005777.1-201ENST00000588332 187 ntBASIC23.65■■□□□ 1.38
CUX1P39880 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC23.65■■□□□ 1.38
CUX1P39880 BX322534.1-201ENST00000635574 241 ntBASIC23.65■■□□□ 1.38
CUX1P39880 AC215524.1-201ENST00000635696 241 ntBASIC23.65■■□□□ 1.38
CUX1P39880 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC23.65■■□□□ 1.38
CUX1P39880 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 RN7SL832P-201ENST00000607781 1756 ntBASIC23.65■■□□□ 1.38
CUX1P39880 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC23.65■■□□□ 1.38
CUX1P39880 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 AC008536.3-201ENST00000623282 1599 ntBASIC23.65■■□□□ 1.38
CUX1P39880 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC23.65■■□□□ 1.38
CUX1P39880 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC23.65■■□□□ 1.38
CUX1P39880 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 AL022313.4-201ENST00000562756 2046 ntBASIC23.65■■□□□ 1.38
CUX1P39880 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC23.65■■□□□ 1.38
CUX1P39880 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CUX1P39880 U3.5-201ENST00000363448 216 ntBASIC23.64■■□□□ 1.38
CUX1P39880 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
CUX1P39880 AC023141.7-201ENST00000430646 407 ntBASIC23.64■■□□□ 1.38
CUX1P39880 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC23.64■■□□□ 1.38
CUX1P39880 SOD2-205ENST00000444946 917 ntTSL 2 BASIC23.64■■□□□ 1.38
CUX1P39880 AC023906.1-201ENST00000486386 453 ntBASIC23.64■■□□□ 1.38
CUX1P39880 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC23.64■■□□□ 1.38
CUX1P39880 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC23.64■■□□□ 1.38
CUX1P39880 IGHEP1-201ENST00000521393 651 ntBASIC23.64■■□□□ 1.38
CUX1P39880 AC079414.2-201ENST00000567157 1104 ntBASIC23.64■■□□□ 1.38
CUX1P39880 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC23.64■■□□□ 1.38
CUX1P39880 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC23.64■■□□□ 1.38
CUX1P39880 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.38
CUX1P39880 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
CUX1P39880 SALL4P6-201ENST00000429385 1691 ntBASIC23.64■■□□□ 1.38
CUX1P39880 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CUX1P39880 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC23.64■■□□□ 1.38
CUX1P39880 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC23.64■■□□□ 1.37
CUX1P39880 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
CUX1P39880 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
CUX1P39880 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC23.64■■□□□ 1.37
CUX1P39880 AC090505.1-201ENST00000430515 1834 ntBASIC23.64■■□□□ 1.37
CUX1P39880 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CUX1P39880 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CUX1P39880 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CUX1P39880 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CUX1P39880 HNRNPA1P21-201ENST00000424115 961 ntBASIC23.64■■□□□ 1.37
CUX1P39880 AC103563.1-201ENST00000429316 123 ntBASIC23.64■■□□□ 1.37
CUX1P39880 AC092810.2-201ENST00000431570 362 ntBASIC23.64■■□□□ 1.37
CUX1P39880 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC23.64■■□□□ 1.37
CUX1P39880 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CUX1P39880 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC23.64■■□□□ 1.37
CUX1P39880 TPT1P11-201ENST00000458482 498 ntBASIC23.64■■□□□ 1.37
CUX1P39880 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC23.64■■□□□ 1.37
CUX1P39880 EMC4-208ENST00000559078 599 ntTSL 3 BASIC23.64■■□□□ 1.37
CUX1P39880 AC120498.7-201ENST00000562876 330 ntBASIC23.64■■□□□ 1.37
CUX1P39880 FBXO36P1-201ENST00000579006 471 ntBASIC23.64■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms