Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG1P18858 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.92■□□□□ 0.3
LIG1P18858 AC022616.1-201ENST00000518688 554 ntBASIC16.92■□□□□ 0.3
LIG1P18858 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.92■□□□□ 0.3
LIG1P18858 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.92■□□□□ 0.3
LIG1P18858 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.92■□□□□ 0.3
LIG1P18858 AC009486.1-201ENST00000569860 813 ntBASIC16.92■□□□□ 0.3
LIG1P18858 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG1P18858 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
LIG1P18858 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.92■□□□□ 0.3
LIG1P18858 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
LIG1P18858 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
LIG1P18858 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG1P18858 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.92■□□□□ 0.3
LIG1P18858 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG1P18858 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
LIG1P18858 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG1P18858 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG1P18858 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIG1P18858 ABR-205ENST00000544583 5595 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG1P18858 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG1P18858 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG1P18858 CICP8-201ENST00000455800 2813 ntBASIC16.92■□□□□ 0.3
LIG1P18858 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG1P18858 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG1P18858 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG1P18858 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG1P18858 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG1P18858 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG1P18858 TCAM1P-207ENST00000485295 1537 ntBASIC16.91■□□□□ 0.3
LIG1P18858 AC011840.2-201ENST00000563063 1520 ntBASIC16.91■□□□□ 0.3
LIG1P18858 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG1P18858 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.91■□□□□ 0.3
LIG1P18858 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC16.91■□□□□ 0.3
LIG1P18858 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC16.91■□□□□ 0.3
LIG1P18858 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
LIG1P18858 FAM90A12P-201ENST00000519497 2375 ntBASIC16.91■□□□□ 0.3
LIG1P18858 FAM90A24P-201ENST00000520792 2369 ntBASIC16.91■□□□□ 0.3
LIG1P18858 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LIG1P18858 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG1P18858 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 AL355864.2-201ENST00000447420 863 ntBASIC16.91■□□□□ 0.3
LIG1P18858 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
LIG1P18858 USP32P1-208ENST00000506594 1164 ntBASIC16.91■□□□□ 0.3
LIG1P18858 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
LIG1P18858 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG1P18858 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 BTNL10-201ENST00000595971 695 ntBASIC16.91■□□□□ 0.3
LIG1P18858 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
LIG1P18858 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LIG1P18858 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LIG1P18858 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LIG1P18858 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.91■□□□□ 0.3
LIG1P18858 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIG1P18858 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG1P18858 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.9■□□□□ 0.3
LIG1P18858 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC16.9■□□□□ 0.3
LIG1P18858 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LIG1P18858 AC111170.3-201ENST00000624282 2464 ntBASIC16.9■□□□□ 0.3
LIG1P18858 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
LIG1P18858 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG1P18858 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG1P18858 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG1P18858 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG1P18858 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LIG1P18858 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG1P18858 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LIG1P18858 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
LIG1P18858 BAATP1-201ENST00000412284 1225 ntBASIC16.9■□□□□ 0.3
LIG1P18858 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
LIG1P18858 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.9■□□□□ 0.3
LIG1P18858 AC007969.1-201ENST00000433675 447 ntBASIC16.9■□□□□ 0.3
LIG1P18858 AC234783.1-201ENST00000441761 496 ntBASIC16.9■□□□□ 0.3
LIG1P18858 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.9■□□□□ 0.3
LIG1P18858 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.9■□□□□ 0.3
LIG1P18858 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LIG1P18858 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.9■□□□□ 0.3
LIG1P18858 AC106760.1-201ENST00000508690 800 ntBASIC16.9■□□□□ 0.3
LIG1P18858 IGHV3-71-201ENST00000523324 359 ntBASIC16.9■□□□□ 0.3
LIG1P18858 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.9■□□□□ 0.3
LIG1P18858 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG1P18858 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.9■□□□□ 0.3
LIG1P18858 AC233724.13-201ENST00000598383 410 ntBASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms