Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
CXCL1P09341 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.59
CXCL1P09341 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC11.4□□□□□ -0.59
CXCL1P09341 HOTTIP-203ENST00000521028 3345 ntTSL 5 BASIC11.4□□□□□ -0.59
CXCL1P09341 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC11.4□□□□□ -0.59
CXCL1P09341 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
CXCL1P09341 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
CXCL1P09341 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC11.4□□□□□ -0.59
CXCL1P09341 AL033529.1-201ENST00000480336 3447 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.59
CXCL1P09341 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 MYO1D-206ENST00000579584 3500 ntTSL 2 BASIC11.39□□□□□ -0.59
CXCL1P09341 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 ZBTB45P1-201ENST00000452761 1456 ntBASIC11.39□□□□□ -0.59
CXCL1P09341 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC11.39□□□□□ -0.59
CXCL1P09341 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 OFD1-203ENST00000380567 3736 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
CXCL1P09341 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 LMBR1L-201ENST00000267102 2934 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC11.39□□□□□ -0.59
CXCL1P09341 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
CXCL1P09341 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
CXCL1P09341 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC11.39□□□□□ -0.59
CXCL1P09341 RNA5SP419-201ENST00000515908 135 ntBASIC11.39□□□□□ -0.59
CXCL1P09341 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC11.39□□□□□ -0.59
CXCL1P09341 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 AL662844.1-201ENST00000546340 181 ntBASIC11.39□□□□□ -0.59
CXCL1P09341 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC11.39□□□□□ -0.59
CXCL1P09341 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC11.39□□□□□ -0.59
CXCL1P09341 AC015910.1-201ENST00000579400 975 ntBASIC11.39□□□□□ -0.59
CXCL1P09341 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 SSH2-211ENST00000590153 570 ntTSL 4 BASIC11.39□□□□□ -0.59
CXCL1P09341 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 AGGF1P10-201ENST00000635005 2191 ntBASIC11.39□□□□□ -0.59
CXCL1P09341 MED24-204ENST00000394128 3479 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC11.39□□□□□ -0.59
CXCL1P09341 FOXN3-219ENST00000615335 2421 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
CXCL1P09341 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC11.39□□□□□ -0.59
CXCL1P09341 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 EGFLAM-204ENST00000397202 2398 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC11.39□□□□□ -0.59
CXCL1P09341 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
CXCL1P09341 EPM2A-207ENST00000611340 2786 ntTSL 2 BASIC11.39□□□□□ -0.59
CXCL1P09341 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC11.39□□□□□ -0.59
CXCL1P09341 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CXCL1P09341 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC11.38□□□□□ -0.59
CXCL1P09341 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 PARP10-205ENST00000525773 3404 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
CXCL1P09341 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
CXCL1P09341 SELPLG-203ENST00000550948 2256 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC11.38□□□□□ -0.59
CXCL1P09341 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
CXCL1P09341 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
CXCL1P09341 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC11.38□□□□□ -0.59
CXCL1P09341 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 ALDH1L1-205ENST00000452905 2758 ntTSL 2 BASIC11.38□□□□□ -0.59
CXCL1P09341 VRK3-209ENST00000594948 1847 ntAPPRIS P3 TSL 2 BASIC11.38□□□□□ -0.59
CXCL1P09341 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
CXCL1P09341 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC11.38□□□□□ -0.59
CXCL1P09341 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC11.38□□□□□ -0.59
CXCL1P09341 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
CXCL1P09341 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC11.38□□□□□ -0.59
CXCL1P09341 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC11.38□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms