Protein–RNA interactions for Protein: P09326

CD48, CD48 antigen, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD48P09326 KLF2P4-201ENST00000451959 1225 ntBASIC15.17■□□□□ 0.02
CD48P09326 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.17■□□□□ 0.02
CD48P09326 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.17■□□□□ 0.02
CD48P09326 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.17■□□□□ 0.02
CD48P09326 AC106886.1-201ENST00000568660 600 ntBASIC15.17■□□□□ 0.02
CD48P09326 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.17■□□□□ 0.02
CD48P09326 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.17■□□□□ 0.02
CD48P09326 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.17■□□□□ 0.02
CD48P09326 AL162274.1-201ENST00000617191 1098 ntBASIC15.17■□□□□ 0.02
CD48P09326 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.17■□□□□ 0.02
CD48P09326 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC15.17■□□□□ 0.02
CD48P09326 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
CD48P09326 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CD48P09326 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CD48P09326 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CD48P09326 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CD48P09326 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CD48P09326 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CD48P09326 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CD48P09326 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC15.17■□□□□ 0.02
CD48P09326 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CD48P09326 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CD48P09326 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CD48P09326 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.17■□□□□ 0.02
CD48P09326 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CD48P09326 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CD48P09326 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CD48P09326 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
CD48P09326 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CD48P09326 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC15.16■□□□□ 0.02
CD48P09326 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.16■□□□□ 0.02
CD48P09326 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
CD48P09326 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.16■□□□□ 0.02
CD48P09326 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.16■□□□□ 0.02
CD48P09326 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CD48P09326 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC15.16■□□□□ 0.02
CD48P09326 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CD48P09326 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.16■□□□□ 0.02
CD48P09326 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 MIR1909-201ENST00000411312 80 ntBASIC15.16■□□□□ 0.02
CD48P09326 AL355994.2-201ENST00000447882 704 ntBASIC15.16■□□□□ 0.02
CD48P09326 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.16■□□□□ 0.02
CD48P09326 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.16■□□□□ 0.02
CD48P09326 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.16■□□□□ 0.02
CD48P09326 AC027237.1-201ENST00000560942 655 ntBASIC15.16■□□□□ 0.02
CD48P09326 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.16■□□□□ 0.02
CD48P09326 MIR4783-201ENST00000580343 82 ntBASIC15.16■□□□□ 0.02
CD48P09326 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.16■□□□□ 0.02
CD48P09326 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.16■□□□□ 0.02
CD48P09326 MIR6775-201ENST00000617557 69 ntBASIC15.16■□□□□ 0.02
CD48P09326 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CD48P09326 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.16■□□□□ 0.02
CD48P09326 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC15.16■□□□□ 0.02
CD48P09326 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.16■□□□□ 0.02
CD48P09326 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CD48P09326 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
CD48P09326 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 AC009093.10-201ENST00000641956 1442 ntBASIC15.16■□□□□ 0.02
CD48P09326 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.16■□□□□ 0.02
CD48P09326 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CD48P09326 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CD48P09326 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CD48P09326 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CD48P09326 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CD48P09326 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.15■□□□□ 0.02
CD48P09326 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.15■□□□□ 0.02
CD48P09326 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CD48P09326 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CD48P09326 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CD48P09326 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CD48P09326 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CD48P09326 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CD48P09326 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.15■□□□□ 0.02
CD48P09326 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CD48P09326 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CD48P09326 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms