Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC18.89■□□□□ 0.61
COL3A1P02461 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC18.89■□□□□ 0.61
COL3A1P02461 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 GUSBP10-201ENST00000417412 665 ntBASIC18.89■□□□□ 0.61
COL3A1P02461 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC18.89■□□□□ 0.61
COL3A1P02461 AC130709.1-201ENST00000484779 1212 ntBASIC18.89■□□□□ 0.61
COL3A1P02461 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18.89■□□□□ 0.61
COL3A1P02461 RN7SL555P-201ENST00000584742 339 ntBASIC18.89■□□□□ 0.61
COL3A1P02461 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL3A1P02461 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC18.89■□□□□ 0.61
COL3A1P02461 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC18.88■□□□□ 0.61
COL3A1P02461 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
COL3A1P02461 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC18.88■□□□□ 0.61
COL3A1P02461 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC18.88■□□□□ 0.61
COL3A1P02461 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL3A1P02461 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 AP000356.3-201ENST00000382243 753 ntBASIC18.88■□□□□ 0.61
COL3A1P02461 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 AC078991.1-201ENST00000437297 610 ntBASIC18.88■□□□□ 0.61
COL3A1P02461 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC18.88■□□□□ 0.61
COL3A1P02461 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 GOLGA2P8-201ENST00000505201 779 ntBASIC18.88■□□□□ 0.61
COL3A1P02461 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC18.88■□□□□ 0.61
COL3A1P02461 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC18.88■□□□□ 0.61
COL3A1P02461 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
COL3A1P02461 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
COL3A1P02461 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
COL3A1P02461 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC18.88■□□□□ 0.61
COL3A1P02461 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
COL3A1P02461 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC18.88■□□□□ 0.61
COL3A1P02461 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC18.88■□□□□ 0.61
COL3A1P02461 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL3A1P02461 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL3A1P02461 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL3A1P02461 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL3A1P02461 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL3A1P02461 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL3A1P02461 AC027601.5-201ENST00000624065 2482 ntBASIC18.87■□□□□ 0.61
COL3A1P02461 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL3A1P02461 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL3A1P02461 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL3A1P02461 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC18.87■□□□□ 0.61
COL3A1P02461 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC18.87■□□□□ 0.61
COL3A1P02461 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.87■□□□□ 0.61
COL3A1P02461 AC006987.1-201ENST00000413610 527 ntBASIC18.87■□□□□ 0.61
COL3A1P02461 HMGA1P1-201ENST00000415560 1062 ntBASIC18.87■□□□□ 0.61
COL3A1P02461 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC18.87■□□□□ 0.61
COL3A1P02461 RN7SL788P-201ENST00000460504 316 ntBASIC18.87■□□□□ 0.61
COL3A1P02461 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC18.87■□□□□ 0.61
COL3A1P02461 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC18.87■□□□□ 0.61
COL3A1P02461 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC18.87■□□□□ 0.61
COL3A1P02461 AC007952.4-201ENST00000573866 637 ntBASIC18.87■□□□□ 0.61
COL3A1P02461 MIR4722-201ENST00000578292 60 ntBASIC18.87■□□□□ 0.61
COL3A1P02461 SPCS2P2-201ENST00000603270 608 ntBASIC18.87■□□□□ 0.61
COL3A1P02461 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC18.87■□□□□ 0.61
COL3A1P02461 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC18.87■□□□□ 0.61
COL3A1P02461 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC18.87■□□□□ 0.61
COL3A1P02461 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL3A1P02461 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
COL3A1P02461 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL3A1P02461 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL3A1P02461 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL3A1P02461 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL3A1P02461 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
COL3A1P02461 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL3A1P02461 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL3A1P02461 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL3A1P02461 USP28-214ENST00000545540 3431 ntTSL 2 BASIC18.86■□□□□ 0.61
COL3A1P02461 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL3A1P02461 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC18.86■□□□□ 0.61
COL3A1P02461 SLC25A15P3-201ENST00000505530 290 ntBASIC18.86■□□□□ 0.61
COL3A1P02461 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC18.86■□□□□ 0.61
COL3A1P02461 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL3A1P02461 POLD4-208ENST00000532830 904 ntTSL 3 BASIC18.86■□□□□ 0.61
COL3A1P02461 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
COL3A1P02461 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL3A1P02461 AC092171.5-201ENST00000608012 942 ntBASIC18.86■□□□□ 0.61
COL3A1P02461 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL3A1P02461 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
COL3A1P02461 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms