Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 AP006294.1-201ENST00000415407 339 ntBASIC14.35□□□□□ -0.11
SIX3O95343 PUDPP3-201ENST00000445368 636 ntBASIC14.35□□□□□ -0.11
SIX3O95343 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.35□□□□□ -0.11
SIX3O95343 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.35□□□□□ -0.11
SIX3O95343 RN7SL837P-201ENST00000463010 287 ntBASIC14.35□□□□□ -0.11
SIX3O95343 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 AP003171.2-201ENST00000528208 925 ntBASIC14.35□□□□□ -0.11
SIX3O95343 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.35□□□□□ -0.11
SIX3O95343 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.35□□□□□ -0.11
SIX3O95343 AC025279.2-201ENST00000569730 653 ntBASIC14.35□□□□□ -0.11
SIX3O95343 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.35□□□□□ -0.11
SIX3O95343 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.35□□□□□ -0.11
SIX3O95343 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.35□□□□□ -0.11
SIX3O95343 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
SIX3O95343 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.35□□□□□ -0.11
SIX3O95343 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.35□□□□□ -0.11
SIX3O95343 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.35□□□□□ -0.11
SIX3O95343 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.34□□□□□ -0.11
SIX3O95343 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.34□□□□□ -0.11
SIX3O95343 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SIX3O95343 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
SIX3O95343 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
SIX3O95343 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.34□□□□□ -0.11
SIX3O95343 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.34□□□□□ -0.11
SIX3O95343 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.34□□□□□ -0.11
SIX3O95343 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.34□□□□□ -0.11
SIX3O95343 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
SIX3O95343 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.34□□□□□ -0.11
SIX3O95343 ALG3P1-201ENST00000508806 1114 ntBASIC14.34□□□□□ -0.11
SIX3O95343 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.34□□□□□ -0.11
SIX3O95343 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.34□□□□□ -0.11
SIX3O95343 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.34□□□□□ -0.11
SIX3O95343 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.34□□□□□ -0.11
SIX3O95343 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.34□□□□□ -0.11
SIX3O95343 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
SIX3O95343 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.34□□□□□ -0.11
SIX3O95343 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
SIX3O95343 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
SIX3O95343 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 AC090643.2-201ENST00000623442 2029 ntBASIC14.34□□□□□ -0.11
SIX3O95343 AL157996.1-201ENST00000624684 2299 ntBASIC14.34□□□□□ -0.11
SIX3O95343 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.34□□□□□ -0.11
SIX3O95343 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SIX3O95343 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
SIX3O95343 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SIX3O95343 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SIX3O95343 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SIX3O95343 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SIX3O95343 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SIX3O95343 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.33□□□□□ -0.11
SIX3O95343 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SIX3O95343 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.33□□□□□ -0.12
SIX3O95343 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
SIX3O95343 AC111170.3-201ENST00000624282 2464 ntBASIC14.33□□□□□ -0.12
SIX3O95343 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SIX3O95343 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
SIX3O95343 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SIX3O95343 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SIX3O95343 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SIX3O95343 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
SIX3O95343 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SIX3O95343 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.33□□□□□ -0.12
SIX3O95343 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SIX3O95343 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SIX3O95343 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.33□□□□□ -0.12
SIX3O95343 AL355864.2-201ENST00000447420 863 ntBASIC14.33□□□□□ -0.12
SIX3O95343 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.33□□□□□ -0.12
SIX3O95343 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SIX3O95343 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
SIX3O95343 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.33□□□□□ -0.12
SIX3O95343 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms