Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL158070.2-201ENST00000623713 1621 ntBASIC14.66□□□□□ -0.06
SHOX2O60902 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.66□□□□□ -0.06
SHOX2O60902 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
SHOX2O60902 SMAD1-215ENST00000515385 2085 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 BSCL2-206ENST00000405837 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 LINC00343-203ENST00000454555 1765 ntTSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 HDAC8-207ENST00000373573 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 IFT122-204ENST00000349441 3569 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 AC002350.2-201ENST00000623894 1828 ntBASIC14.65□□□□□ -0.06
SHOX2O60902 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 TLE1P1-201ENST00000422965 589 ntBASIC14.65□□□□□ -0.06
SHOX2O60902 MED15P5-201ENST00000423150 992 ntBASIC14.65□□□□□ -0.06
SHOX2O60902 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC14.65□□□□□ -0.06
SHOX2O60902 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.65□□□□□ -0.06
SHOX2O60902 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.65□□□□□ -0.06
SHOX2O60902 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 AC103988.2-201ENST00000561804 725 ntBASIC14.65□□□□□ -0.06
SHOX2O60902 RARRES2P9-201ENST00000565168 469 ntBASIC14.65□□□□□ -0.06
SHOX2O60902 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.65□□□□□ -0.06
SHOX2O60902 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC14.65□□□□□ -0.06
SHOX2O60902 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.65□□□□□ -0.06
SHOX2O60902 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.65□□□□□ -0.06
SHOX2O60902 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.65□□□□□ -0.06
SHOX2O60902 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC14.65□□□□□ -0.06
SHOX2O60902 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SHOX2O60902 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SHOX2O60902 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 SALL4P5-201ENST00000419001 1760 ntBASIC14.65□□□□□ -0.06
SHOX2O60902 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC14.65□□□□□ -0.06
SHOX2O60902 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 AC064801.2-201ENST00000625052 1303 ntBASIC14.65□□□□□ -0.06
SHOX2O60902 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHOX2O60902 AC073862.5-201ENST00000624129 2027 ntBASIC14.65□□□□□ -0.06
SHOX2O60902 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
SHOX2O60902 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SHOX2O60902 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SHOX2O60902 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
SHOX2O60902 ZNF259P1-201ENST00000407656 1365 ntBASIC14.64□□□□□ -0.07
SHOX2O60902 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 ZNF473-203ENST00000445728 2833 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
SHOX2O60902 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
SHOX2O60902 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
SHOX2O60902 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
SHOX2O60902 TROVE2-206ENST00000400968 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 FAM58CP-201ENST00000435741 640 ntBASIC14.64□□□□□ -0.07
SHOX2O60902 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.64□□□□□ -0.07
SHOX2O60902 KRT18P3-201ENST00000451602 1288 ntBASIC14.64□□□□□ -0.07
SHOX2O60902 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
SHOX2O60902 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.64□□□□□ -0.07
SHOX2O60902 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC14.64□□□□□ -0.07
SHOX2O60902 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.64□□□□□ -0.07
SHOX2O60902 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.64□□□□□ -0.07
SHOX2O60902 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.64□□□□□ -0.07
SHOX2O60902 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.64□□□□□ -0.07
SHOX2O60902 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.64□□□□□ -0.07
SHOX2O60902 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.64□□□□□ -0.07
SHOX2O60902 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.64□□□□□ -0.07
SHOX2O60902 HERC3-203ENST00000407637 2634 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 DDX5-210ENST00000578804 2021 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 ENDOV-203ENST00000517795 2548 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 POU2F2-216ENST00000560558 3282 ntTSL 5 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms