Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HIF3AQ9Y2N7 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 SORD2P-201ENST00000558556 1069 ntBASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 PEG13-201ENST00000631594 5667 ntBASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 AC009093.2-202ENST00000620513 2079 ntBASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
HIF3AQ9Y2N7 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 SSR1P1-201ENST00000407630 814 ntBASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 RPL28-204ENST00000431533 590 ntTSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 AC007389.4-201ENST00000454674 793 ntBASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 RN7SL837P-201ENST00000463010 287 ntBASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms