Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 EEF1DP6-201ENST00000449232 372 ntBASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 MPRIPP1-201ENST00000452433 1089 ntBASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 RCC2P8-201ENST00000502779 1035 ntBASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 AC027601.3-201ENST00000622907 509 ntBASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
SSX2IPQ9Y2D8 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 AC244394.1-201ENST00000435000 1665 ntBASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 MIR193BHG-211ENST00000641433 5365 ntBASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 VDAC1P1-201ENST00000439229 848 ntBASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 AC234782.1-201ENST00000451950 919 ntBASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 POU5F1P2-201ENST00000521750 823 ntBASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 AL160314.3-201ENST00000556041 767 ntBASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 AC087481.3-201ENST00000602886 1894 ntBASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SSX2IPQ9Y2D8 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.79■□□□□ 0.12
SSX2IPQ9Y2D8 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SSX2IPQ9Y2D8 PEG13-201ENST00000631594 5667 ntBASIC15.79■□□□□ 0.12
SSX2IPQ9Y2D8 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SSX2IPQ9Y2D8 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SSX2IPQ9Y2D8 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SSX2IPQ9Y2D8 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SSX2IPQ9Y2D8 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SSX2IPQ9Y2D8 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SSX2IPQ9Y2D8 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SSX2IPQ9Y2D8 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms