Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 AC015688.4-201ENST00000580780 1647 ntBASIC11.9□□□□□ -0.5
FOXA2Q9Y261 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 TMEM14DP-201ENST00000422205 345 ntBASIC11.9□□□□□ -0.5
FOXA2Q9Y261 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 USP32P1-208ENST00000506594 1164 ntBASIC11.9□□□□□ -0.5
FOXA2Q9Y261 GCOM2-201ENST00000509133 1104 ntBASIC11.9□□□□□ -0.5
FOXA2Q9Y261 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC11.9□□□□□ -0.5
FOXA2Q9Y261 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 GSN-209ENST00000449733 2702 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA2Q9Y261 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
FOXA2Q9Y261 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
FOXA2Q9Y261 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
FOXA2Q9Y261 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
FOXA2Q9Y261 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
FOXA2Q9Y261 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC11.9□□□□□ -0.51
FOXA2Q9Y261 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
FOXA2Q9Y261 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.51
FOXA2Q9Y261 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 MSTO2P-201ENST00000314835 1709 ntBASIC11.89□□□□□ -0.51
FOXA2Q9Y261 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 FOS-202ENST00000535987 1402 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA2Q9Y261 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms