Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 WRB-204ENST00000398753 699 ntTSL 3 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 FAM86GP-201ENST00000448322 971 ntBASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 AC067863.1-201ENST00000494933 530 ntBASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 MPI-209ENST00000564003 1195 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 AC055811.4-201ENST00000624039 1754 ntBASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 AC023090.2-201ENST00000625182 2110 ntBASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 PLB1-205ENST00000422425 5115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
CHMP1AQ9HD42 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 SLC6A6P1-201ENST00000413933 1850 ntBASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 WDR73-202ENST00000434634 5387 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 DNAJB3-202ENST00000449667 1266 ntBASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AC022447.6-201ENST00000515522 438 ntBASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 RAB35-202ENST00000534951 939 ntTSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 SSH2-210ENST00000582084 560 ntTSL 3 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 ADNP-203ENST00000396029 6261 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms