Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 MTHFR-210ENST00000641407 2387 ntBASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 AC018629.1-201ENST00000623381 1736 ntBASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 LAP3P2-201ENST00000454686 1454 ntBASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 NCR3-202ENST00000376071 541 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 TSPY25P-201ENST00000429463 745 ntBASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 SPTLC1P5-201ENST00000450718 252 ntBASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 NEU3-202ENST00000526068 431 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 ACTG1P17-201ENST00000558391 1119 ntBASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 AL157813.1-201ENST00000612996 587 ntBASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 AL390755.1-201ENST00000623716 2027 ntBASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4AQ9BY43 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 RAN-210ENST00000541630 1475 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms