Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC17.31■□□□□ 0.36
SYNE3Q6ZMZ3 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 FAM21FP-201ENST00000426241 1131 ntBASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 AL035414.1-201ENST00000451327 857 ntBASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 AC103988.2-201ENST00000561804 725 ntBASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 AP001002.3-201ENST00000623482 206 ntBASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 AC139712.1-201ENST00000378256 1875 ntBASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 MYADML-201ENST00000474610 2147 ntBASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 LINC01230-201ENST00000625222 3017 ntBASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 AC015802.1-201ENST00000588104 1449 ntBASIC17.3■□□□□ 0.36
SYNE3Q6ZMZ3 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 ABR-228ENST00000574437 3196 ntTSL 5 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 AC027601.3-201ENST00000622907 509 ntBASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SYNE3Q6ZMZ3 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms