Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.47□□□□□ -0.09
PKNOX1P55347 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.47□□□□□ -0.09
PKNOX1P55347 AC131206.1-201ENST00000538078 1211 ntBASIC14.47□□□□□ -0.09
PKNOX1P55347 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.47□□□□□ -0.09
PKNOX1P55347 MIR6074-201ENST00000612054 107 ntBASIC14.47□□□□□ -0.09
PKNOX1P55347 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.47□□□□□ -0.09
PKNOX1P55347 AC005252.2-201ENST00000624630 1141 ntBASIC14.47□□□□□ -0.09
PKNOX1P55347 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
PKNOX1P55347 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
PKNOX1P55347 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PKNOX1P55347 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.47□□□□□ -0.09
PKNOX1P55347 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PKNOX1P55347 AL356585.2-201ENST00000625078 2396 ntBASIC14.47□□□□□ -0.09
PKNOX1P55347 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
PKNOX1P55347 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
PKNOX1P55347 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PKNOX1P55347 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PKNOX1P55347 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PKNOX1P55347 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
PKNOX1P55347 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PKNOX1P55347 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.47□□□□□ -0.09
PKNOX1P55347 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PKNOX1P55347 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
PKNOX1P55347 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
PKNOX1P55347 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.46□□□□□ -0.09
PKNOX1P55347 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
PKNOX1P55347 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
PKNOX1P55347 AL138725.1-201ENST00000407347 1314 ntBASIC14.46□□□□□ -0.09
PKNOX1P55347 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.46□□□□□ -0.09
PKNOX1P55347 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.46□□□□□ -0.09
PKNOX1P55347 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.46□□□□□ -0.09
PKNOX1P55347 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
PKNOX1P55347 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
PKNOX1P55347 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
PKNOX1P55347 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
PKNOX1P55347 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
PKNOX1P55347 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 AC098850.1-201ENST00000419919 790 ntBASIC14.46□□□□□ -0.09
PKNOX1P55347 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.46□□□□□ -0.09
PKNOX1P55347 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.46□□□□□ -0.09
PKNOX1P55347 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.46□□□□□ -0.09
PKNOX1P55347 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
PKNOX1P55347 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.46□□□□□ -0.09
PKNOX1P55347 AP001063.1-201ENST00000568332 529 ntBASIC14.46□□□□□ -0.09
PKNOX1P55347 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.46□□□□□ -0.09
PKNOX1P55347 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.46□□□□□ -0.09
PKNOX1P55347 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
PKNOX1P55347 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
PKNOX1P55347 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.46□□□□□ -0.09
PKNOX1P55347 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.46□□□□□ -0.09
PKNOX1P55347 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.46□□□□□ -0.09
PKNOX1P55347 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PKNOX1P55347 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC14.46□□□□□ -0.1
PKNOX1P55347 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PKNOX1P55347 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PKNOX1P55347 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
PKNOX1P55347 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PKNOX1P55347 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
PKNOX1P55347 AC011840.2-201ENST00000563063 1520 ntBASIC14.46□□□□□ -0.1
PKNOX1P55347 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.46□□□□□ -0.1
PKNOX1P55347 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PKNOX1P55347 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 C8orf49-201ENST00000525043 1968 ntBASIC14.45□□□□□ -0.1
PKNOX1P55347 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PKNOX1P55347 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
PKNOX1P55347 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.45□□□□□ -0.1
PKNOX1P55347 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PKNOX1P55347 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC14.45□□□□□ -0.1
PKNOX1P55347 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PKNOX1P55347 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
PKNOX1P55347 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.45□□□□□ -0.1
PKNOX1P55347 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.45□□□□□ -0.1
PKNOX1P55347 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms