Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 KRT8P28-201ENST00000433288 1390 ntBASIC14.21□□□□□ -0.14
FOXA1P55317 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA1P55317 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA1P55317 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.21□□□□□ -0.14
FOXA1P55317 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
FOXA1P55317 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
FOXA1P55317 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
FOXA1P55317 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 AL137784.3-201ENST00000623858 2288 ntBASIC14.2□□□□□ -0.14
FOXA1P55317 SBF1P1-201ENST00000444527 5631 ntBASIC14.2□□□□□ -0.14
FOXA1P55317 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA1P55317 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
FOXA1P55317 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
FOXA1P55317 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.2□□□□□ -0.14
FOXA1P55317 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA1P55317 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 PTP4A1P2-201ENST00000546033 454 ntBASIC14.2□□□□□ -0.14
FOXA1P55317 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.2□□□□□ -0.14
FOXA1P55317 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA1P55317 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA1P55317 ECM1P1-201ENST00000604092 1279 ntBASIC14.2□□□□□ -0.14
FOXA1P55317 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
FOXA1P55317 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.2□□□□□ -0.14
FOXA1P55317 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA1P55317 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA1P55317 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 CROT-203ENST00000419147 2959 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA1P55317 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.19□□□□□ -0.14
FOXA1P55317 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
FOXA1P55317 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 PTENP1-202ENST00000532280 3996 ntBASIC14.19□□□□□ -0.14
FOXA1P55317 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
FOXA1P55317 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC14.19□□□□□ -0.14
FOXA1P55317 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
FOXA1P55317 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC14.19□□□□□ -0.14
FOXA1P55317 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 AC005252.3-201ENST00000623855 2258 ntBASIC14.19□□□□□ -0.14
FOXA1P55317 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA1P55317 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.19□□□□□ -0.14
FOXA1P55317 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.19□□□□□ -0.14
FOXA1P55317 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.19□□□□□ -0.14
FOXA1P55317 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.19□□□□□ -0.14
FOXA1P55317 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.19□□□□□ -0.14
FOXA1P55317 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
FOXA1P55317 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
FOXA1P55317 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
FOXA1P55317 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA1P55317 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
FOXA1P55317 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms