Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC12.99□□□□□ -0.33
SOX2P48431 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC12.99□□□□□ -0.33
SOX2P48431 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC12.99□□□□□ -0.33
SOX2P48431 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
SOX2P48431 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 AC111170.3-201ENST00000624282 2464 ntBASIC12.99□□□□□ -0.33
SOX2P48431 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 BTBD7P1-201ENST00000447253 1453 ntBASIC12.99□□□□□ -0.33
SOX2P48431 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
SOX2P48431 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 MIR943-201ENST00000401286 94 ntBASIC12.99□□□□□ -0.33
SOX2P48431 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 AC241585.1-201ENST00000433527 519 ntBASIC12.99□□□□□ -0.33
SOX2P48431 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC12.99□□□□□ -0.33
SOX2P48431 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC12.99□□□□□ -0.33
SOX2P48431 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC12.99□□□□□ -0.33
SOX2P48431 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12.99□□□□□ -0.33
SOX2P48431 AC009407.1-201ENST00000568958 598 ntBASIC12.99□□□□□ -0.33
SOX2P48431 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC12.99□□□□□ -0.33
SOX2P48431 AL662799.1-202ENST00000614205 422 ntBASIC12.99□□□□□ -0.33
SOX2P48431 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC12.99□□□□□ -0.33
SOX2P48431 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
SOX2P48431 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
SOX2P48431 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.99□□□□□ -0.33
SOX2P48431 FAM90A12P-201ENST00000519497 2375 ntBASIC12.99□□□□□ -0.33
SOX2P48431 FAM90A24P-201ENST00000520792 2369 ntBASIC12.99□□□□□ -0.33
SOX2P48431 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC12.99□□□□□ -0.33
SOX2P48431 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 AC015688.4-201ENST00000580780 1647 ntBASIC12.99□□□□□ -0.33
SOX2P48431 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SOX2P48431 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
SOX2P48431 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
SOX2P48431 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC12.98□□□□□ -0.33
SOX2P48431 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC12.98□□□□□ -0.33
SOX2P48431 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
SOX2P48431 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 PPT1-213ENST00000641319 2388 ntBASIC12.98□□□□□ -0.33
SOX2P48431 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
SOX2P48431 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC12.98□□□□□ -0.33
SOX2P48431 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 AC007969.1-201ENST00000433675 447 ntBASIC12.98□□□□□ -0.33
SOX2P48431 FAM86GP-201ENST00000448322 971 ntBASIC12.98□□□□□ -0.33
SOX2P48431 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 AC009477.1-201ENST00000452936 217 ntBASIC12.98□□□□□ -0.33
SOX2P48431 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC12.98□□□□□ -0.33
SOX2P48431 AC022616.1-201ENST00000518688 554 ntBASIC12.98□□□□□ -0.33
SOX2P48431 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC12.98□□□□□ -0.33
SOX2P48431 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC12.98□□□□□ -0.33
SOX2P48431 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.98□□□□□ -0.33
SOX2P48431 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC12.98□□□□□ -0.33
SOX2P48431 RARRES2P5-201ENST00000564013 466 ntBASIC12.98□□□□□ -0.33
SOX2P48431 DUX4L47-201ENST00000566374 394 ntBASIC12.98□□□□□ -0.33
SOX2P48431 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC12.98□□□□□ -0.33
SOX2P48431 SPDYE22P-201ENST00000582158 798 ntBASIC12.98□□□□□ -0.33
SOX2P48431 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC12.98□□□□□ -0.33
SOX2P48431 AC093813.1-201ENST00000605066 256 ntBASIC12.98□□□□□ -0.33
SOX2P48431 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
SOX2P48431 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
SOX2P48431 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC12.98□□□□□ -0.33
SOX2P48431 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC12.98□□□□□ -0.33
SOX2P48431 HFE2-206ENST00000634927 506 ntTSL 4 BASIC12.98□□□□□ -0.33
SOX2P48431 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC12.98□□□□□ -0.33
SOX2P48431 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
SOX2P48431 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
SOX2P48431 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms