Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 MYADML-201ENST00000474610 2147 ntBASIC17.11■□□□□ 0.33
BRCA1P38398 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC17.11■□□□□ 0.33
BRCA1P38398 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
BRCA1P38398 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
BRCA1P38398 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
BRCA1P38398 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.11■□□□□ 0.33
BRCA1P38398 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 AL512310.5-201ENST00000551999 515 ntBASIC17.11■□□□□ 0.33
BRCA1P38398 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC17.11■□□□□ 0.33
BRCA1P38398 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC17.11■□□□□ 0.33
BRCA1P38398 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC17.11■□□□□ 0.33
BRCA1P38398 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.11■□□□□ 0.33
BRCA1P38398 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
BRCA1P38398 AL137077.2-201ENST00000635124 1608 ntBASIC17.11■□□□□ 0.33
BRCA1P38398 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC17.1■□□□□ 0.33
BRCA1P38398 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.1■□□□□ 0.33
BRCA1P38398 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.1■□□□□ 0.33
BRCA1P38398 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.1■□□□□ 0.33
BRCA1P38398 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC17.1■□□□□ 0.33
BRCA1P38398 CETN3-205ENST00000522842 664 ntTSL 2 BASIC17.1■□□□□ 0.33
BRCA1P38398 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC17.1■□□□□ 0.33
BRCA1P38398 AP000920.1-201ENST00000531824 344 ntBASIC17.1■□□□□ 0.33
BRCA1P38398 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC17.1■□□□□ 0.33
BRCA1P38398 RN7SL478P-201ENST00000584358 298 ntBASIC17.1■□□□□ 0.33
BRCA1P38398 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
BRCA1P38398 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
BRCA1P38398 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC17.1■□□□□ 0.33
BRCA1P38398 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.1■□□□□ 0.33
BRCA1P38398 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.1■□□□□ 0.33
BRCA1P38398 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 RBP4-203ENST00000371469 814 ntTSL 5 BASIC17.1■□□□□ 0.33
BRCA1P38398 DNM1P46-202ENST00000415963 882 ntBASIC17.1■□□□□ 0.33
BRCA1P38398 CD37-203ENST00000426897 1204 ntTSL 2 BASIC17.1■□□□□ 0.33
BRCA1P38398 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC17.1■□□□□ 0.33
BRCA1P38398 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BRCA1P38398 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC17.1■□□□□ 0.33
BRCA1P38398 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC17.1■□□□□ 0.33
BRCA1P38398 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC17.1■□□□□ 0.33
BRCA1P38398 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
BRCA1P38398 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
BRCA1P38398 AL354702.1-201ENST00000442006 1960 ntBASIC17.09■□□□□ 0.33
BRCA1P38398 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
BRCA1P38398 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.09■□□□□ 0.33
BRCA1P38398 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.09■□□□□ 0.33
BRCA1P38398 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.09■□□□□ 0.33
BRCA1P38398 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.09■□□□□ 0.33
BRCA1P38398 AC068760.1-201ENST00000493579 1953 ntBASIC17.09■□□□□ 0.33
BRCA1P38398 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
BRCA1P38398 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
BRCA1P38398 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 HSD3BP1-201ENST00000286193 1111 ntBASIC17.09■□□□□ 0.33
BRCA1P38398 POP5-201ENST00000341039 913 ntTSL 2 BASIC17.09■□□□□ 0.33
BRCA1P38398 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 THAP4-203ENST00000402545 833 ntTSL 5 BASIC17.09■□□□□ 0.33
BRCA1P38398 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC17.09■□□□□ 0.33
BRCA1P38398 OR7E155P-201ENST00000412208 1014 ntBASIC17.09■□□□□ 0.33
BRCA1P38398 CCND3P1-201ENST00000438347 580 ntBASIC17.09■□□□□ 0.33
BRCA1P38398 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC17.09■□□□□ 0.33
BRCA1P38398 RN7SL672P-201ENST00000474091 317 ntBASIC17.09■□□□□ 0.33
BRCA1P38398 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC17.09■□□□□ 0.33
BRCA1P38398 TPST2P1-201ENST00000564073 1102 ntBASIC17.09■□□□□ 0.33
BRCA1P38398 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
BRCA1P38398 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
BRCA1P38398 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
BRCA1P38398 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC17.08■□□□□ 0.33
BRCA1P38398 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
BRCA1P38398 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
BRCA1P38398 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms