Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC13.49□□□□□ -0.25
MSX1P28360 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.49□□□□□ -0.25
MSX1P28360 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
MSX1P28360 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.49□□□□□ -0.25
MSX1P28360 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.49□□□□□ -0.25
MSX1P28360 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
MSX1P28360 MIR4683-201ENST00000579659 81 ntBASIC13.49□□□□□ -0.25
MSX1P28360 AL358472.3-201ENST00000608147 415 ntBASIC13.49□□□□□ -0.25
MSX1P28360 AL096828.3-201ENST00000615354 462 ntBASIC13.49□□□□□ -0.25
MSX1P28360 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC13.49□□□□□ -0.25
MSX1P28360 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
MSX1P28360 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC13.49□□□□□ -0.25
MSX1P28360 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
MSX1P28360 AC009093.2-202ENST00000620513 2079 ntBASIC13.49□□□□□ -0.25
MSX1P28360 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
MSX1P28360 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.49□□□□□ -0.25
MSX1P28360 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.48□□□□□ -0.25
MSX1P28360 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 AGGF1P1-201ENST00000509500 2073 ntBASIC13.48□□□□□ -0.25
MSX1P28360 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 AC232323.1-201ENST00000540724 2099 ntBASIC13.48□□□□□ -0.25
MSX1P28360 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.48□□□□□ -0.25
MSX1P28360 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 MIR663B-201ENST00000408361 115 ntBASIC13.48□□□□□ -0.25
MSX1P28360 AC010141.1-201ENST00000411585 623 ntBASIC13.48□□□□□ -0.25
MSX1P28360 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.48□□□□□ -0.25
MSX1P28360 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13.48□□□□□ -0.25
MSX1P28360 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC13.48□□□□□ -0.25
MSX1P28360 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.48□□□□□ -0.25
MSX1P28360 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 FOS-206ENST00000555347 1280 ntTSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 AC103988.2-201ENST00000561804 725 ntBASIC13.48□□□□□ -0.25
MSX1P28360 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.48□□□□□ -0.25
MSX1P28360 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC13.48□□□□□ -0.25
MSX1P28360 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.48□□□□□ -0.25
MSX1P28360 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC13.48□□□□□ -0.25
MSX1P28360 AL136301.1-201ENST00000615830 422 ntBASIC13.48□□□□□ -0.25
MSX1P28360 AC027601.3-201ENST00000622907 509 ntBASIC13.48□□□□□ -0.25
MSX1P28360 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.48□□□□□ -0.25
MSX1P28360 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.48□□□□□ -0.25
MSX1P28360 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
MSX1P28360 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
MSX1P28360 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MSX1P28360 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.48□□□□□ -0.25
MSX1P28360 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.47□□□□□ -0.25
MSX1P28360 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
MSX1P28360 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.47□□□□□ -0.25
MSX1P28360 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
MSX1P28360 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
MSX1P28360 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.47□□□□□ -0.25
MSX1P28360 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 AC139712.1-201ENST00000378256 1875 ntBASIC13.47□□□□□ -0.25
MSX1P28360 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
MSX1P28360 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms