Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
CLDN9O95484 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CLDN9O95484 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
CLDN9O95484 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.22□□□□□ -0.13
CLDN9O95484 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CLDN9O95484 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.21□□□□□ -0.13
CLDN9O95484 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.21□□□□□ -0.13
CLDN9O95484 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.21□□□□□ -0.13
CLDN9O95484 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 HSPA8P5-201ENST00000456928 2069 ntBASIC14.21□□□□□ -0.13
CLDN9O95484 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CLDN9O95484 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.21□□□□□ -0.13
CLDN9O95484 FAM197Y7-201ENST00000432892 766 ntBASIC14.21□□□□□ -0.13
CLDN9O95484 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.21□□□□□ -0.13
CLDN9O95484 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.21□□□□□ -0.13
CLDN9O95484 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.21□□□□□ -0.13
CLDN9O95484 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 FTH1P14-201ENST00000482930 551 ntBASIC14.21□□□□□ -0.13
CLDN9O95484 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.21□□□□□ -0.13
CLDN9O95484 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CLDN9O95484 AL596325.1-201ENST00000563991 1082 ntBASIC14.21□□□□□ -0.13
CLDN9O95484 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.21□□□□□ -0.13
CLDN9O95484 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
CLDN9O95484 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.21□□□□□ -0.13
CLDN9O95484 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
CLDN9O95484 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CLDN9O95484 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.21□□□□□ -0.13
CLDN9O95484 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLDN9O95484 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.21□□□□□ -0.14
CLDN9O95484 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CLDN9O95484 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLDN9O95484 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLDN9O95484 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
CLDN9O95484 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.21□□□□□ -0.14
CLDN9O95484 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
CLDN9O95484 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.21□□□□□ -0.14
CLDN9O95484 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CLDN9O95484 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLDN9O95484 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.21□□□□□ -0.14
CLDN9O95484 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLDN9O95484 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.21□□□□□ -0.14
CLDN9O95484 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
CLDN9O95484 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CLDN9O95484 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.2□□□□□ -0.14
CLDN9O95484 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CLDN9O95484 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
CLDN9O95484 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.2□□□□□ -0.14
CLDN9O95484 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CLDN9O95484 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.2□□□□□ -0.14
CLDN9O95484 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CLDN9O95484 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.2□□□□□ -0.14
CLDN9O95484 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.2□□□□□ -0.14
CLDN9O95484 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 ARSEP1-201ENST00000420443 635 ntBASIC14.2□□□□□ -0.14
CLDN9O95484 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.2□□□□□ -0.14
CLDN9O95484 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.2□□□□□ -0.14
CLDN9O95484 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.2□□□□□ -0.14
CLDN9O95484 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.2□□□□□ -0.14
CLDN9O95484 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.2□□□□□ -0.14
CLDN9O95484 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.2□□□□□ -0.14
CLDN9O95484 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.2□□□□□ -0.14
CLDN9O95484 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.2□□□□□ -0.14
CLDN9O95484 AP003171.2-201ENST00000528208 925 ntBASIC14.2□□□□□ -0.14
CLDN9O95484 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.2□□□□□ -0.14
CLDN9O95484 AC132938.2-201ENST00000579188 680 ntBASIC14.2□□□□□ -0.14
CLDN9O95484 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CLDN9O95484 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.2□□□□□ -0.14
CLDN9O95484 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.2□□□□□ -0.14
CLDN9O95484 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CLDN9O95484 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms