Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 AL445228.2-201ENST00000605589 952 ntBASIC11.87□□□□□ -0.51
HMGB3O15347 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC11.87□□□□□ -0.51
HMGB3O15347 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 SHPRH-211ENST00000629427 7338 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 WWC2-205ENST00000504005 5247 ntTSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 ALK-205ENST00000618119 4646 ntTSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 AP3S2-216ENST00000617003 1561 ntBASIC11.87□□□□□ -0.51
HMGB3O15347 MVK-214ENST00000629016 1591 ntTSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 SLC6A6P1-201ENST00000413933 1850 ntBASIC11.87□□□□□ -0.51
HMGB3O15347 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 AL157414.3-201ENST00000624276 1954 ntBASIC11.87□□□□□ -0.51
HMGB3O15347 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 GRID2-201ENST00000282020 6117 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 AGGF1P1-201ENST00000509500 2073 ntBASIC11.87□□□□□ -0.51
HMGB3O15347 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 IKZF4-202ENST00000431367 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
HMGB3O15347 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 DCT-201ENST00000377028 5064 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC11.86□□□□□ -0.51
HMGB3O15347 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 AC090505.1-201ENST00000430515 1834 ntBASIC11.86□□□□□ -0.51
HMGB3O15347 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
HMGB3O15347 NAV1-202ENST00000367296 13091 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
HMGB3O15347 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC11.86□□□□□ -0.51
HMGB3O15347 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
HMGB3O15347 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC11.86□□□□□ -0.51
HMGB3O15347 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
HMGB3O15347 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 AL355306.1-201ENST00000415580 579 ntBASIC11.86□□□□□ -0.51
HMGB3O15347 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 AC079781.3-201ENST00000449110 356 ntBASIC11.86□□□□□ -0.51
HMGB3O15347 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC11.86□□□□□ -0.51
HMGB3O15347 IGHV3-22-201ENST00000520721 359 ntBASIC11.86□□□□□ -0.51
HMGB3O15347 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC11.86□□□□□ -0.51
HMGB3O15347 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC11.86□□□□□ -0.51
HMGB3O15347 LITAF-211ENST00000572255 516 ntTSL 4 BASIC11.86□□□□□ -0.51
HMGB3O15347 ARL16-209ENST00000573715 763 ntTSL 3 BASIC11.86□□□□□ -0.51
HMGB3O15347 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
HMGB3O15347 ARL16-211ENST00000576135 694 ntTSL 3 BASIC11.86□□□□□ -0.51
HMGB3O15347 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC11.86□□□□□ -0.51
HMGB3O15347 Z83851.2-201ENST00000609564 659 ntBASIC11.86□□□□□ -0.51
HMGB3O15347 VPS51-217ENST00000639871 243 ntTSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 AC018665.1-201ENST00000622927 1362 ntBASIC11.86□□□□□ -0.51
HMGB3O15347 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
HMGB3O15347 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 CPPED1-202ENST00000381774 6273 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 CPEB3-202ENST00000412050 7664 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 BARD1-212ENST00000617164 5449 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 SYNPO-202ENST00000394243 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC11.86□□□□□ -0.51
HMGB3O15347 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC11.86□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms