Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
FOXN3O00409 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.69■□□□□ 0.1
FOXN3O00409 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
FOXN3O00409 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXN3O00409 AC010141.1-201ENST00000411585 623 ntBASIC15.69■□□□□ 0.1
FOXN3O00409 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
FOXN3O00409 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXN3O00409 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXN3O00409 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXN3O00409 CNN2P10-201ENST00000443067 918 ntBASIC15.69■□□□□ 0.1
FOXN3O00409 GAPDHP21-201ENST00000450301 1010 ntBASIC15.69■□□□□ 0.1
FOXN3O00409 AL035414.1-201ENST00000451327 857 ntBASIC15.69■□□□□ 0.1
FOXN3O00409 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.69■□□□□ 0.1
FOXN3O00409 KRT17P8-201ENST00000540749 863 ntBASIC15.69■□□□□ 0.1
FOXN3O00409 AC027237.1-201ENST00000560942 655 ntBASIC15.69■□□□□ 0.1
FOXN3O00409 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.69■□□□□ 0.1
FOXN3O00409 AC106886.1-201ENST00000568660 600 ntBASIC15.69■□□□□ 0.1
FOXN3O00409 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXN3O00409 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXN3O00409 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.69■□□□□ 0.1
FOXN3O00409 AL512343.1-201ENST00000605837 169 ntBASIC15.69■□□□□ 0.1
FOXN3O00409 AL136301.1-201ENST00000615830 422 ntBASIC15.69■□□□□ 0.1
FOXN3O00409 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
FOXN3O00409 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXN3O00409 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
FOXN3O00409 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXN3O00409 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
FOXN3O00409 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXN3O00409 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXN3O00409 SHC1P1-201ENST00000425230 1745 ntBASIC15.68■□□□□ 0.1
FOXN3O00409 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
FOXN3O00409 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXN3O00409 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXN3O00409 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
FOXN3O00409 KRT8P24-201ENST00000560290 1559 ntBASIC15.68■□□□□ 0.1
FOXN3O00409 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXN3O00409 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
FOXN3O00409 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.68■□□□□ 0.1
FOXN3O00409 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.68■□□□□ 0.1
FOXN3O00409 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.68■□□□□ 0.1
FOXN3O00409 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
FOXN3O00409 AC112492.5-201ENST00000421897 457 ntBASIC15.68■□□□□ 0.1
FOXN3O00409 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXN3O00409 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXN3O00409 AL355994.2-201ENST00000447882 704 ntBASIC15.68■□□□□ 0.1
FOXN3O00409 HIST2H2BB-201ENST00000449108 381 ntBASIC15.68■□□□□ 0.1
FOXN3O00409 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.68■□□□□ 0.1
FOXN3O00409 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.68■□□□□ 0.1
FOXN3O00409 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXN3O00409 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms