Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
MMP28Q9H239 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
MMP28Q9H239 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
MMP28Q9H239 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 AC012508.2-201ENST00000567613 1472 ntBASIC13.06□□□□□ -0.32
MMP28Q9H239 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.06□□□□□ -0.32
MMP28Q9H239 CICP1-201ENST00000416803 2410 ntBASIC13.06□□□□□ -0.32
MMP28Q9H239 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.06□□□□□ -0.32
MMP28Q9H239 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 AC067863.1-201ENST00000494933 530 ntBASIC13.06□□□□□ -0.32
MMP28Q9H239 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC13.06□□□□□ -0.32
MMP28Q9H239 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC13.06□□□□□ -0.32
MMP28Q9H239 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.06□□□□□ -0.32
MMP28Q9H239 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.06□□□□□ -0.32
MMP28Q9H239 DUX4L27-201ENST00000554796 1261 ntBASIC13.06□□□□□ -0.32
MMP28Q9H239 GREM1-201ENST00000560677 623 ntTSL 4 BASIC13.06□□□□□ -0.32
MMP28Q9H239 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC13.06□□□□□ -0.32
MMP28Q9H239 INO80C-206ENST00000586489 594 ntTSL 3 BASIC13.06□□□□□ -0.32
MMP28Q9H239 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.06□□□□□ -0.32
MMP28Q9H239 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC13.06□□□□□ -0.32
MMP28Q9H239 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
MMP28Q9H239 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.06□□□□□ -0.32
MMP28Q9H239 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.06□□□□□ -0.32
MMP28Q9H239 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
MMP28Q9H239 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC13.06□□□□□ -0.32
MMP28Q9H239 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.06□□□□□ -0.32
MMP28Q9H239 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC13.06□□□□□ -0.32
MMP28Q9H239 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.06□□□□□ -0.32
MMP28Q9H239 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
MMP28Q9H239 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.05□□□□□ -0.32
MMP28Q9H239 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
MMP28Q9H239 KRT8P37-201ENST00000451609 1420 ntBASIC13.05□□□□□ -0.32
MMP28Q9H239 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC13.05□□□□□ -0.32
MMP28Q9H239 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
MMP28Q9H239 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 TCAM1P-207ENST00000485295 1537 ntBASIC13.05□□□□□ -0.32
MMP28Q9H239 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.05□□□□□ -0.32
MMP28Q9H239 MTND6P24-201ENST00000440466 518 ntBASIC13.05□□□□□ -0.32
MMP28Q9H239 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.05□□□□□ -0.32
MMP28Q9H239 COX20P2-201ENST00000452636 358 ntBASIC13.05□□□□□ -0.32
MMP28Q9H239 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC13.05□□□□□ -0.32
MMP28Q9H239 AC093214.1-201ENST00000511688 1107 ntBASIC13.05□□□□□ -0.32
MMP28Q9H239 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC13.05□□□□□ -0.32
MMP28Q9H239 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC13.05□□□□□ -0.32
MMP28Q9H239 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 BANF1P1-201ENST00000553684 263 ntBASIC13.05□□□□□ -0.32
MMP28Q9H239 HNRNPUP1-201ENST00000554987 333 ntBASIC13.05□□□□□ -0.32
MMP28Q9H239 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC13.05□□□□□ -0.32
MMP28Q9H239 MIR4745-201ENST00000577608 62 ntBASIC13.05□□□□□ -0.32
MMP28Q9H239 RN7SL828P-201ENST00000607615 303 ntBASIC13.05□□□□□ -0.32
MMP28Q9H239 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC13.05□□□□□ -0.32
MMP28Q9H239 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms