Protein–RNA interactions for Protein: Q969G3

SMARCE1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, humanhuman

Predictions only

Length 411 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1Q969G3 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 AC215219.1-201ENST00000400706 1817 ntBASIC16.62■□□□□ 0.25
SMARCE1Q969G3 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 AC092183.1-201ENST00000469884 875 ntBASIC16.62■□□□□ 0.25
SMARCE1Q969G3 ELK1P1-201ENST00000485699 580 ntBASIC16.62■□□□□ 0.25
SMARCE1Q969G3 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 AC027612.1-201ENST00000445234 2395 ntBASIC16.62■□□□□ 0.25
SMARCE1Q969G3 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SMARCE1Q969G3 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 RN7SKP230-201ENST00000365642 335 ntBASIC16.61■□□□□ 0.25
SMARCE1Q969G3 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 AL162726.2-201ENST00000438986 1017 ntBASIC16.61■□□□□ 0.25
SMARCE1Q969G3 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 MIR6074-201ENST00000612054 107 ntBASIC16.61■□□□□ 0.25
SMARCE1Q969G3 CU634019.7-201ENST00000624153 1185 ntBASIC16.61■□□□□ 0.25
SMARCE1Q969G3 FP236241.2-201ENST00000624906 1185 ntBASIC16.61■□□□□ 0.25
SMARCE1Q969G3 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SMARCE1Q969G3 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 AC093433.1-201ENST00000458048 571 ntBASIC16.6■□□□□ 0.25
SMARCE1Q969G3 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 AC022137.2-201ENST00000503482 481 ntBASIC16.6■□□□□ 0.25
SMARCE1Q969G3 GCOM2-201ENST00000509133 1104 ntBASIC16.6■□□□□ 0.25
SMARCE1Q969G3 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC16.6■□□□□ 0.25
SMARCE1Q969G3 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms