Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 RPL14-203ENST00000416518 812 ntTSL 3 BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 NME6-208ENST00000435684 599 ntTSL 2 BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 AC007952.5-201ENST00000572818 1486 ntBASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 AL080243.1-201ENST00000423293 1060 ntBASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 HIST1H2APS2-201ENST00000454426 370 ntBASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC9.49□□□□□ -0.89
VPS13DQ5THJ4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 AC136604.1-202ENST00000425471 771 ntBASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 BMF-206ENST00000558774 671 ntTSL 3 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 RPSAP12-201ENST00000435879 888 ntBASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 LY6E-215ENST00000523847 427 ntTSL 3 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 AC020904.3-201ENST00000624199 442 ntBASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 KRT8P38-201ENST00000441370 1430 ntBASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 AL022313.4-201ENST00000562756 2046 ntBASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 AL359091.4-201ENST00000610052 409 ntBASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC9.48□□□□□ -0.89
VPS13DQ5THJ4 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 HLA-DMA-202ENST00000395303 1007 ntBASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 AP000244.1-201ENST00000424582 201 ntBASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 VENTXP4-201ENST00000449029 958 ntBASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 AC016582.2-202ENST00000587765 1094 ntBASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 MIR6125-201ENST00000618986 96 ntBASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
VPS13DQ5THJ4 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms