Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIG3P49916 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
LIG3P49916 KRT8P22-201ENST00000562317 1415 ntBASIC15.58■□□□□ 0.08
LIG3P49916 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIG3P49916 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIG3P49916 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIG3P49916 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIG3P49916 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIG3P49916 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
LIG3P49916 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIG3P49916 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
LIG3P49916 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
LIG3P49916 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.57■□□□□ 0.08
LIG3P49916 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
LIG3P49916 AC120045.2-201ENST00000567334 178 ntBASIC15.57■□□□□ 0.08
LIG3P49916 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.57■□□□□ 0.08
LIG3P49916 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.57■□□□□ 0.08
LIG3P49916 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.57■□□□□ 0.08
LIG3P49916 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.57■□□□□ 0.08
LIG3P49916 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.57■□□□□ 0.08
LIG3P49916 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.57■□□□□ 0.08
LIG3P49916 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.57■□□□□ 0.08
LIG3P49916 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIG3P49916 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC15.56■□□□□ 0.08
LIG3P49916 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LIG3P49916 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LIG3P49916 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.56■□□□□ 0.08
LIG3P49916 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
LIG3P49916 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
LIG3P49916 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.56■□□□□ 0.08
LIG3P49916 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 AL162726.2-201ENST00000438986 1017 ntBASIC15.56■□□□□ 0.08
LIG3P49916 TTTY23B-201ENST00000442790 549 ntBASIC15.56■□□□□ 0.08
LIG3P49916 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.56■□□□□ 0.08
LIG3P49916 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.56■□□□□ 0.08
LIG3P49916 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.56■□□□□ 0.08
LIG3P49916 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.56■□□□□ 0.08
LIG3P49916 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.56■□□□□ 0.08
LIG3P49916 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.56■□□□□ 0.08
LIG3P49916 AC124283.3-201ENST00000570869 594 ntBASIC15.56■□□□□ 0.08
LIG3P49916 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.56■□□□□ 0.08
LIG3P49916 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.56■□□□□ 0.08
LIG3P49916 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
LIG3P49916 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.56■□□□□ 0.08
LIG3P49916 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.56■□□□□ 0.08
LIG3P49916 CU634019.7-201ENST00000624153 1185 ntBASIC15.56■□□□□ 0.08
LIG3P49916 FP236241.2-201ENST00000624906 1185 ntBASIC15.56■□□□□ 0.08
LIG3P49916 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC15.56■□□□□ 0.08
LIG3P49916 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LIG3P49916 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
LIG3P49916 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.56■□□□□ 0.08
LIG3P49916 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
LIG3P49916 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms