Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.01□□□□□ -0.33
SOX2P48431 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC13.01□□□□□ -0.33
SOX2P48431 SRD5A3P1-201ENST00000603021 949 ntBASIC13.01□□□□□ -0.33
SOX2P48431 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.01□□□□□ -0.33
SOX2P48431 BX539320.1-201ENST00000623759 877 ntBASIC13.01□□□□□ -0.33
SOX2P48431 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.01□□□□□ -0.33
SOX2P48431 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SOX2P48431 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SOX2P48431 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13.01□□□□□ -0.33
SOX2P48431 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SOX2P48431 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SOX2P48431 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SOX2P48431 STK40-201ENST00000359297 4837 ntTSL 2 BASIC13.01□□□□□ -0.33
SOX2P48431 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SOX2P48431 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
SOX2P48431 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SOX2P48431 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC13.01□□□□□ -0.33
SOX2P48431 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SOX2P48431 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SOX2P48431 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SOX2P48431 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SOX2P48431 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
SOX2P48431 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC13□□□□□ -0.33
SOX2P48431 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13□□□□□ -0.33
SOX2P48431 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13□□□□□ -0.33
SOX2P48431 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13□□□□□ -0.33
SOX2P48431 AC011498.7-201ENST00000624986 2027 ntBASIC13□□□□□ -0.33
SOX2P48431 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
SOX2P48431 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13□□□□□ -0.33
SOX2P48431 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
SOX2P48431 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13□□□□□ -0.33
SOX2P48431 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13□□□□□ -0.33
SOX2P48431 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13□□□□□ -0.33
SOX2P48431 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 TCAM1P-207ENST00000485295 1537 ntBASIC13□□□□□ -0.33
SOX2P48431 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC13□□□□□ -0.33
SOX2P48431 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 MPV17-208ENST00000405076 603 ntTSL 5 BASIC13□□□□□ -0.33
SOX2P48431 AL139094.1-201ENST00000405549 1188 ntBASIC13□□□□□ -0.33
SOX2P48431 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13□□□□□ -0.33
SOX2P48431 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC13□□□□□ -0.33
SOX2P48431 NUS1P3-201ENST00000423502 862 ntBASIC13□□□□□ -0.33
SOX2P48431 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13□□□□□ -0.33
SOX2P48431 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
SOX2P48431 DNAJB3-202ENST00000449667 1266 ntBASIC13□□□□□ -0.33
SOX2P48431 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC13□□□□□ -0.33
SOX2P48431 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13□□□□□ -0.33
SOX2P48431 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13□□□□□ -0.33
SOX2P48431 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13□□□□□ -0.33
SOX2P48431 AC135586.1-201ENST00000539323 574 ntBASIC13□□□□□ -0.33
SOX2P48431 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC13□□□□□ -0.33
SOX2P48431 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13□□□□□ -0.33
SOX2P48431 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
SOX2P48431 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC13□□□□□ -0.33
SOX2P48431 AL158211.3-201ENST00000607385 239 ntBASIC13□□□□□ -0.33
SOX2P48431 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
SOX2P48431 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
SOX2P48431 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
SOX2P48431 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 COL6A4P2-202ENST00000504443 2753 ntBASIC13□□□□□ -0.33
SOX2P48431 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
SOX2P48431 FP325330.2-201ENST00000624219 5630 ntBASIC13□□□□□ -0.33
SOX2P48431 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC13□□□□□ -0.33
SOX2P48431 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13□□□□□ -0.33
SOX2P48431 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13□□□□□ -0.33
SOX2P48431 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC13□□□□□ -0.33
SOX2P48431 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms