Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
SOX3P41225 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SOX3P41225 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 AC092135.3-201ENST00000624151 1846 ntBASIC13.9□□□□□ -0.18
SOX3P41225 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.9□□□□□ -0.18
SOX3P41225 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 FAM8A4P-201ENST00000435433 1213 ntBASIC13.9□□□□□ -0.18
SOX3P41225 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SOX3P41225 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.9□□□□□ -0.18
SOX3P41225 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.9□□□□□ -0.18
SOX3P41225 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.9□□□□□ -0.18
SOX3P41225 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.9□□□□□ -0.18
SOX3P41225 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.9□□□□□ -0.18
SOX3P41225 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.9□□□□□ -0.18
SOX3P41225 DUX4L45-201ENST00000566406 1057 ntBASIC13.9□□□□□ -0.18
SOX3P41225 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.9□□□□□ -0.18
SOX3P41225 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.9□□□□□ -0.18
SOX3P41225 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.9□□□□□ -0.18
SOX3P41225 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 MBLAC2-202ENST00000514906 1936 ntBASIC13.9□□□□□ -0.18
SOX3P41225 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.19
SOX3P41225 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.9□□□□□ -0.19
SOX3P41225 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
SOX3P41225 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
SOX3P41225 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
SOX3P41225 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
SOX3P41225 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
SOX3P41225 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
SOX3P41225 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 CICP17-201ENST00000418553 2377 ntBASIC13.89□□□□□ -0.19
SOX3P41225 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.89□□□□□ -0.19
SOX3P41225 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.89□□□□□ -0.19
SOX3P41225 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.89□□□□□ -0.19
SOX3P41225 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.89□□□□□ -0.19
SOX3P41225 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.89□□□□□ -0.19
SOX3P41225 OR10B1P-201ENST00000601666 907 ntBASIC13.89□□□□□ -0.19
SOX3P41225 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
SOX3P41225 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.89□□□□□ -0.19
SOX3P41225 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms