Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13.51□□□□□ -0.25
MSX1P28360 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.51□□□□□ -0.25
MSX1P28360 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC13.51□□□□□ -0.25
MSX1P28360 NEU3-202ENST00000526068 431 ntTSL 2 BASIC13.51□□□□□ -0.25
MSX1P28360 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
MSX1P28360 ACTG1P17-201ENST00000558391 1119 ntBASIC13.51□□□□□ -0.25
MSX1P28360 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.51□□□□□ -0.25
MSX1P28360 RN7SL190P-201ENST00000582519 257 ntBASIC13.51□□□□□ -0.25
MSX1P28360 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.51□□□□□ -0.25
MSX1P28360 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.51□□□□□ -0.25
MSX1P28360 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.51□□□□□ -0.25
MSX1P28360 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
MSX1P28360 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.51□□□□□ -0.25
MSX1P28360 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.51□□□□□ -0.25
MSX1P28360 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 AL354702.1-201ENST00000442006 1960 ntBASIC13.51□□□□□ -0.25
MSX1P28360 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
MSX1P28360 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
MSX1P28360 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
MSX1P28360 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.5□□□□□ -0.25
MSX1P28360 MTHFR-210ENST00000641407 2387 ntBASIC13.5□□□□□ -0.25
MSX1P28360 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
MSX1P28360 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC13.5□□□□□ -0.25
MSX1P28360 CSH2-202ENST00000345366 598 ntTSL 5 BASIC13.5□□□□□ -0.25
MSX1P28360 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
MSX1P28360 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
MSX1P28360 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.5□□□□□ -0.25
MSX1P28360 AC079178.1-201ENST00000420915 656 ntBASIC13.5□□□□□ -0.25
MSX1P28360 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.5□□□□□ -0.25
MSX1P28360 BX284668.4-201ENST00000453917 508 ntBASIC13.5□□□□□ -0.25
MSX1P28360 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC13.5□□□□□ -0.25
MSX1P28360 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.5□□□□□ -0.25
MSX1P28360 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC13.5□□□□□ -0.25
MSX1P28360 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.5□□□□□ -0.25
MSX1P28360 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC13.5□□□□□ -0.25
MSX1P28360 AC244157.2-201ENST00000616239 1006 ntBASIC13.5□□□□□ -0.25
MSX1P28360 AC007386.2-202ENST00000622718 1018 ntTSL 3 BASIC13.5□□□□□ -0.25
MSX1P28360 AP001002.3-201ENST00000623482 206 ntBASIC13.5□□□□□ -0.25
MSX1P28360 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
MSX1P28360 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.5□□□□□ -0.25
MSX1P28360 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.5□□□□□ -0.25
MSX1P28360 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 AC113367.3-201ENST00000508316 1912 ntBASIC13.5□□□□□ -0.25
MSX1P28360 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.5□□□□□ -0.25
MSX1P28360 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.5□□□□□ -0.25
MSX1P28360 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.5□□□□□ -0.25
MSX1P28360 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.5□□□□□ -0.25
MSX1P28360 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.5□□□□□ -0.25
MSX1P28360 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
MSX1P28360 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.49□□□□□ -0.25
MSX1P28360 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.49□□□□□ -0.25
MSX1P28360 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.49□□□□□ -0.25
MSX1P28360 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
MSX1P28360 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
MSX1P28360 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.49□□□□□ -0.25
MSX1P28360 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
MSX1P28360 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
MSX1P28360 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MSX1P28360 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.49□□□□□ -0.25
MSX1P28360 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.49□□□□□ -0.25
MSX1P28360 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms