Protein–RNA interactions for Protein: P09630

HOXC6, Homeobox protein Hox-C6, humanhuman

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6P09630 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HOXC6P09630 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
HOXC6P09630 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXC6P09630 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXC6P09630 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXC6P09630 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXC6P09630 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HOXC6P09630 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HOXC6P09630 LINC00528-201ENST00000600723 2160 ntBASIC16.39■□□□□ 0.21
HOXC6P09630 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HOXC6P09630 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
HOXC6P09630 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC16.39■□□□□ 0.21
HOXC6P09630 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXC6P09630 GCSHP3-201ENST00000431120 391 ntBASIC16.39■□□□□ 0.21
HOXC6P09630 RPL35P9-201ENST00000446059 350 ntBASIC16.39■□□□□ 0.21
HOXC6P09630 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXC6P09630 AC138466.4-201ENST00000623965 852 ntBASIC16.39■□□□□ 0.21
HOXC6P09630 AC009145.4-201ENST00000625119 1294 ntBASIC16.39■□□□□ 0.21
HOXC6P09630 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXC6P09630 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXC6P09630 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HOXC6P09630 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 TCAF2P1-201ENST00000291129 2421 ntBASIC16.39■□□□□ 0.21
HOXC6P09630 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXC6P09630 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXC6P09630 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXC6P09630 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HOXC6P09630 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC6P09630 FTX-216ENST00000638985 1367 ntTSL 5 BASIC16.38■□□□□ 0.21
HOXC6P09630 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXC6P09630 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HOXC6P09630 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXC6P09630 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 CICP23-201ENST00000605013 2741 ntBASIC16.38■□□□□ 0.21
HOXC6P09630 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.38■□□□□ 0.21
HOXC6P09630 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.38■□□□□ 0.21
HOXC6P09630 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC16.38■□□□□ 0.21
HOXC6P09630 AC234644.1-201ENST00000406065 370 ntBASIC16.38■□□□□ 0.21
HOXC6P09630 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 CSNK1G2P1-201ENST00000442675 955 ntBASIC16.38■□□□□ 0.21
HOXC6P09630 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC16.38■□□□□ 0.21
HOXC6P09630 AC026410.1-201ENST00000507366 1101 ntBASIC16.38■□□□□ 0.21
HOXC6P09630 NSD1-211ENST00000511258 809 ntTSL 3 BASIC16.38■□□□□ 0.21
HOXC6P09630 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC16.38■□□□□ 0.21
HOXC6P09630 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXC6P09630 NAMA-206ENST00000605377 509 ntTSL 5 BASIC16.38■□□□□ 0.21
HOXC6P09630 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXC6P09630 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HOXC6P09630 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXC6P09630 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXC6P09630 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC6P09630 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.38■□□□□ 0.21
HOXC6P09630 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.37■□□□□ 0.21
HOXC6P09630 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXC6P09630 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXC6P09630 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXC6P09630 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXC6P09630 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HOXC6P09630 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXC6P09630 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXC6P09630 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.37■□□□□ 0.21
HOXC6P09630 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXC6P09630 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXC6P09630 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
HOXC6P09630 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.37■□□□□ 0.21
HOXC6P09630 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.37■□□□□ 0.21
HOXC6P09630 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC16.37■□□□□ 0.21
HOXC6P09630 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXC6P09630 OR8T1P-201ENST00000421347 918 ntBASIC16.37■□□□□ 0.21
HOXC6P09630 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC16.37■□□□□ 0.21
HOXC6P09630 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXC6P09630 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms