Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 AL627231.1-201ENST00000394467 1125 ntBASIC18.94■□□□□ 0.62
COL3A1P02461 FXNP2-201ENST00000411625 547 ntBASIC18.94■□□□□ 0.62
COL3A1P02461 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC18.94■□□□□ 0.62
COL3A1P02461 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC18.94■□□□□ 0.62
COL3A1P02461 LY6E-208ENST00000520531 490 ntTSL 2 BASIC18.94■□□□□ 0.62
COL3A1P02461 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC18.94■□□□□ 0.62
COL3A1P02461 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC18.94■□□□□ 0.62
COL3A1P02461 COG4-212ENST00000564653 590 ntTSL 5 BASIC18.94■□□□□ 0.62
COL3A1P02461 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
COL3A1P02461 AL021707.6-201ENST00000609212 491 ntBASIC18.94■□□□□ 0.62
COL3A1P02461 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
COL3A1P02461 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
COL3A1P02461 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC18.94■□□□□ 0.62
COL3A1P02461 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
COL3A1P02461 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
COL3A1P02461 API5-208ENST00000531273 1868 ntTSL 2 BASIC18.93■□□□□ 0.62
COL3A1P02461 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL3A1P02461 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL3A1P02461 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL3A1P02461 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC18.93■□□□□ 0.62
COL3A1P02461 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
COL3A1P02461 RPL3P2-204ENST00000413027 1203 ntBASIC18.93■□□□□ 0.62
COL3A1P02461 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL3A1P02461 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC18.93■□□□□ 0.62
COL3A1P02461 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC18.93■□□□□ 0.62
COL3A1P02461 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL3A1P02461 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL3A1P02461 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC18.93■□□□□ 0.62
COL3A1P02461 RPL18AP3-201ENST00000462885 528 ntBASIC18.93■□□□□ 0.62
COL3A1P02461 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
COL3A1P02461 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC18.93■□□□□ 0.62
COL3A1P02461 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC18.93■□□□□ 0.62
COL3A1P02461 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC18.93■□□□□ 0.62
COL3A1P02461 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.93■□□□□ 0.62
COL3A1P02461 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
COL3A1P02461 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC18.93■□□□□ 0.62
COL3A1P02461 AC073352.2-201ENST00000609385 439 ntBASIC18.93■□□□□ 0.62
COL3A1P02461 USP39-207ENST00000450066 2086 ntTSL 2 BASIC18.93■□□□□ 0.62
COL3A1P02461 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL3A1P02461 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL3A1P02461 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL3A1P02461 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.93■□□□□ 0.62
COL3A1P02461 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL3A1P02461 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL3A1P02461 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC18.93■□□□□ 0.62
COL3A1P02461 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL3A1P02461 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL3A1P02461 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC18.92■□□□□ 0.62
COL3A1P02461 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 AC074138.1-201ENST00000611182 1303 ntBASIC18.92■□□□□ 0.62
COL3A1P02461 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC18.92■□□□□ 0.62
COL3A1P02461 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 NOC2LP1-201ENST00000450578 752 ntBASIC18.92■□□□□ 0.62
COL3A1P02461 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC18.92■□□□□ 0.62
COL3A1P02461 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC18.92■□□□□ 0.62
COL3A1P02461 RPL18AP8-201ENST00000486071 528 ntBASIC18.92■□□□□ 0.62
COL3A1P02461 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC18.92■□□□□ 0.62
COL3A1P02461 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
COL3A1P02461 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC18.92■□□□□ 0.62
COL3A1P02461 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC18.92■□□□□ 0.62
COL3A1P02461 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC18.92■□□□□ 0.62
COL3A1P02461 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
COL3A1P02461 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
COL3A1P02461 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC18.92■□□□□ 0.62
COL3A1P02461 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
COL3A1P02461 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC18.92■□□□□ 0.62
COL3A1P02461 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL3A1P02461 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms